MICAN : a protein structure alignment algorithm that can handle Multiple-chains, Inverse alignments, Ca only models, Alternative alignments, and Non-sequential alignments. - Shintaro Minami; Kengo Sawada; George Chikenji (BMC Bioinform., 2013)

VS-APPLE: A Virtual Screening Algorithm Using Promiscuous Protein-Ligand Complexes. - Tatsuya Okuno; Koya Kato; Tomoki P. Terada; Masaki Sasai; George Chikenji (J. Chem. Inf. Model., 2015)

MICAN-SQ: a sequential protein structure alignment program that is applicable to monomers and all types of oligomers. - Shintaro Minami; Kengo Sawada; Motonori Ota; George Chikenji (Bioinform., 2018)

Lattice protein design using Bayesian learning. - Tomoei Takahashi; George Chikenji; Kei Tokita (CoRR, 2020)

Protein superfolds are characterised as frustration-free topologies: A case study of pure parallel β-sheet topologies. - Hiroto Murata; Kazuma Toko; George Chikenji (PLoS Comput. Biol., 2024)