Multiway modeling and analysis in stem cell systems biology. - Bülent Yener; Evrim Acar; Phaedra Agius; Kristin P. Bennett; Scott L. Vandenberg; George E. Plopper (BMC Syst. Biol., 2008)

ECM-aware cell-graph mining for bone tissue modeling and classification. - Cemal Çagatay Bilgin; Peter Bullough; George E. Plopper; Bülent Yener (Data Min. Knowl. Discov., 2010)

Classification of breast cancer grades through quantitative characterization of ductal structure morphology in three-dimensional cultures. - Basak Oztan; Lindsey M. Polizzotti; Cemal Çagatay Bilgin; Kira M. Henderson; George E. Plopper; Bülent Yener (BCB, 2011)

Quantitative metric profiles capture three-dimensional temporospatial architecture to discriminate cellular functional states. - Lindsey M. Polizzotti; Kira M. Henderson; Basak Oztan; Cemal Çagatay Bilgin; Bülent Yener; George E. Plopper (BMC Medical Imaging, 2011)

Biologically-driven cell-graphs for breast tissue grading. - Basak Oztan; Katherine R. Shubert; Chris S. Bjornsson; George E. Plopper; Bülent Yener (ISBI, 2013)