Modeling Gene Expression with Differential Equations. - Ting Chen; Hongyu L. He; George M. Church (Pacific Symposium on Biocomputing, 1999)

Biclustering of Expression Data. - Yizong Cheng; George M. Church (ISMB, 2000)

PDB_ISL: an intermediate sequence library for protein structure assignment. - Sarah A. Teichmann; Cyrus Chothia; George M. Church; Jong-Chan Park (RECOMB, 2000)

Fast assignment of protein structures to sequences using the Intermediate Sequence Library PDB-ISL. - Sarah A. Teichmann; Cyrus Chothia; George M. Church; Jong-Chan Park (Bioinform., 2000)

Hunger for new technologies, metrics, and spatiotemporal models in functional genomic (abstract only). - George M. Church (RECOMB, 2001)

Aligning gene expression time series with time warping algorithms. - John Aach; George M. Church (Bioinform., 2001)

Dynamic simulation of the human red blood cell metabolic network. - Neema Jamshidi; Jeremy S. Edwards; Tom Fahland; George M. Church; Bernhard O. Palsson (Bioinform., 2001)

Algorithms for Identifying Protein Cross-Links via Tandem Mass Spectrometry. - Ting Chen; Jacob D. Jaffe; George M. Church (J. Comput. Biol., 2001)

A Dynamic Programming Approach to De Novo Peptide Sequencing via Tandem Mass Spectrometry. - Ting Chen; Ming-Yang Kao; Matthew Tepel; John Rush; George M. Church (J. Comput. Biol., 2001)

Discovery of DNA Regulatory Motifs. - Abigail Manson McGuire; George M. Church (Gene Regulations and Metabolism, 2002)

Automated modelling of signal transduction networks. - Martin Steffen; Allegra Petti; John Aach; Patrik D'haeseleer; George M. Church (BMC Bioinform., 2002)

Predicting phenotype from patterns of annotation. - Oliver D. King; Jeffrey C. Lee; Aimée M. Dudley; Daniel M. Janse; George M. Church; Frederick P. Roth (ISMB (Supplement of Bioinformatics), 2003)

Estimating and Improving Protein Interaction Error Rates. - Patrik D'haeseleer; George M. Church (CSB, 2004)

Filling gaps in a metabolic network using expression information. - Peter V. Kharchenko; Dennis Vitkup; George M. Church (ISMB/ECCB (Supplement of Bioinformatics), 2004)

Preferred in vivo ubiquitination sites. - André Catic; Cal T. Collins; George M. Church; Hidde L. Ploegh (Bioinform., 2004)

Prediction of similarly acting cis-regulatory modules by subsequence profiling and comparative genomics in Drosophila melanogaster and D.pseudoobscura. - Yonatan H. Grad; Frederick P. Roth; Marc S. Halfon; George M. Church (Bioinform., 2004)

yMGV: a cross-species expression data mining tool. - Gaëlle Lelandais; Stéphane Le Crom; Frédéric Devaux; Stéphane Vialette; George M. Church; Claude Jacq; Philippe Marc (Nucleic Acids Res., 2004)

Improving molecular cancer class discovery through sparse non-negative matrix factorization. - Yuan Gao; George M. Church (Bioinform., 2005)

Identifying metabolic enzymes with multiple types of association evidence. - Peter V. Kharchenko; Lifeng Chen; Yoav Freund; Dennis Vitkup; George M. Church (BMC Bioinform., 2006)

Free Factories: Unified Infrastructure for Data Intensive Web Services. - Alexander Wait Zaranek; Tom Clegg; Ward Vandewege; George M. Church (USENIX ATC, 2008)

Design and self-assembly of DNA into nanoscale 3D shapes. - Shawn M. Douglas; Hendrik Dietz; Tim Liedl; Björn Högberg; Franziska Graf; Adam H. Marblestone; Surat Teerapittayanon; Alejandro Vazquez; George M. Church; William M. Shih (SIGGRAPH Talks, 2009)

Meta-analysis of age-related gene expression profiles identifies common signatures of aging. - João Pedro de Magalhães; João Curado; George M. Church (Bioinform., 2009)

Physical principles for scalable neural recording. - Adam H. Marblestone; Bradley M. Zamft; Yael Maguire; Mikhail G. Shapiro; Thaddeus Cybulski; Joshua I. Glaser; Dario Amodei; P. Benjamin Stranges; Reza Kalhor; David Dalrymple; Dongjin Seo; Elad Alon; et al. (Frontiers Comput. Neurosci., 2013)

Statistical Analysis of Molecular Signal Recording. - Joshua I. Glaser; Bradley M. Zamft; Adam H. Marblestone; Jeffrey R. Moffitt; Keith E. J. Tyo; Edward S. Boyden III; George M. Church; Konrad P. Körding (PLoS Comput. Biol., 2013)

Redirector: Designing Cell Factories by Reconstructing the Metabolic Objective. - Graham Rockwell; Nicholas J. Guido; George M. Church (PLoS Comput. Biol., 2013)

Genome editing assessment using CRISPR Genome Analyzer (CRISPR-GA). - Marc Güell; Luhan Yang; George M. Church (Bioinform., 2014)

The Naked Mole Rat Genome Resource: facilitating analyses of cancer and longevity-related adaptations. - Michael Keane; Thomas Craig; Jessica Alföldi; Aaron M. Berlin; Jeremy Johnson; Andrei Seluanov; Vera Gorbunova; Federica Di Palma; Kerstin Lindblad-Toh; George M. Church; João Pedro de Magalhães (Bioinform., 2014)

Spatial information in large-scale neural recordings. - Thaddeus Cybulski; Joshua I. Glaser; Adam Henry Marblestone; Bradley M. Zamft; Edward S. Boyden III; George M. Church; Konrad P. Körding (Frontiers Comput. Neurosci., 2014)

CHOPCHOP: a CRISPR/Cas9 and TALEN web tool for genome editing. - Tessa G. Montague; José M. Cruz; James A. Gagnon; George M. Church; Eivind Valen (Nucleic Acids Res., 2014)

Puzzle Imaging: Using Large-scale Dimensionality Reduction Algorithms for Localization. - Joshua I. Glaser; Bradley M. Zamft; George M. Church; Konrad P. Körding (CoRR, 2015)

Biocontainment of genetically modified organisms by synthetic protein design. - Daniel J. Mandell; Marc J. Lajoie; Michael T. Mee; Ryo Takeuchi; Gleb Kuznetsov; Julie E. Norville; Christopher J. Gregg; Barry L. Stoddard; George M. Church (Nat., 2015)

Corrigendum: Biocontainment of genetically modified organisms by synthetic protein design. - Daniel J. Mandell; Marc J. Lajoie; Michael T. Mee; Ryo Takeuchi; Gleb Kuznetsov; Julie E. Norville; Christopher J. Gregg; Barry L. Stoddard; George M. Church (Nat., 2015)

Forward Error Correction for DNA Data Storage. - Meinolf Blawat; Klaus Gaedke; Ingo Huetter; Xiao-Ming Chen; Brian Turczyk; Samuel A. Inverso; Benjamin Pruitt; George M. Church (ICCS, 2016)

Variational auto-encoding of protein sequences. - Sam Sinai; Eric D. Kelsic; George M. Church; Martin A. Nowak (CoRR, 2017)

Nucleotide-time alignment for molecular recorders. - Thaddeus Cybulski; Edward S. Boyden; George M. Church; Keith E. J. Tyo; Konrad P. Körding (PLoS Comput. Biol., 2017)

Single-Molecule Characterization of a Nanopore-Coupled Cas9 Protein on an Electrode Array. - Mirkó Palla; David B. Thompson; George M. Church (IEEE SENSORS, 2018)

A haplotype-aware de novo assembly of related individuals using pedigree sequence graph. - Shilpa Garg; John Aach; Heng Li 002; Isaac Sebenius; Richard Durbin; George M. Church (Bioinform., 2020)

TBDB: a database of structurally annotated T-box riboswitch: tRNA pairs. - Jorge A. Marchand; Merrick D. Pierson smela; Thomas H. H. Jordan; Kamesh Narasimhan; George M. Church (Nucleic Acids Res., 2021)

Citizen-centered, auditable and privacy-preserving population genomics. - Dennis Grishin; Jean Louis Raisaro; Juan Ramón Troncoso-Pastoriza; Kamal Obbad; Kevin Quinn 007; Mickaël Misbach; Jared Gollhardt; João Sá Sousa; Jacques Fellay; George M. Church; Jean-Pierre Hubaux (Nat. Comput. Sci., 2021)

Towards practical and robust DNA-based data archiving using the yin-yang codec system. - Zhi Ping; Shihong Chen; Guangyu Zhou; Xiaoluo Huang; Sha Joe Zhu; Haoling Zhang; Henry H. Lee; Zhaojun Lan; Jie Cui; Tai Chen; Wenwei Zhang; Huanming Yang; et al. (Nat. Comput. Sci., 2022)