PathCORE-T: identifying and visualizing globally co-occurring pathways in large transcriptomic compendia. - Kathleen M. Chen; Jie Tan; Gregory P. Way; Georgia Doing; Deborah A. Hogan; Casey S. Greene (BioData Min., 2018)

SOPHIE: Generative Neural Networks Separate Common and Specific Transcriptional Responses. - Alexandra J. Lee; Dallas L. Mould; Jake Crawford; Dongbo Hu; Rani K. Powers; Georgia Doing; James C. Costello; Deborah A. Hogan; Casey S. Greene (Genom. Proteom. Bioinform., 2022)