Pegasys: software for executing and integrating analyses of biological sequences. - Sohrab P. Shah; David Y. M. He; Jessica N. Sawkins; Jeffrey C. Druce; Gerald T. Quon; Drew Lett; Grace X. Y. Zheng; Tao Xu; B. F. Francis Ouellette (BMC Bioinform., 2004)

Jabiru: Harnessing Java 3D Behaviors for Device and Display Portability. - Julie N. Stromer; Gerald T. Quon; Paul M. K. Gordon; Andrei L. Turinsky; Christoph W. Sensen (IEEE Computer Graphics and Applications, 2005)

A mixture model for the evolution of gene expression in non-homogeneous datasets. - Gerald T. Quon; Yee Whye Teh; Esther T. Chan; Timothy R. Hughes; Michael Brudno; Quaid Morris (NIPS, 2008)

ISOLATE: a computational strategy for identifying the primary origin of cancers using high-throughput sequencing. - Gerald T. Quon; Quaid Morris (Bioinform., 2009)

Unsupervised detection of genes of influence in lung cancer using biological networks. - Anna Goldenberg; Sara Mostafavi; Gerald T. Quon; Paul C. Boutros; Quaid Morris (Bioinform., 2011)

Computational purification of tumor gene expression data. - Amit G. Deshwar; Gerald T. Quon; Quaid Morris (BMC Bioinform., 2011)

PERT: A Method for Expression Deconvolution of Human Blood Samples from Varied Microenvironmental and Developmental Conditions. - Wenlian Qiao; Gerald T. Quon; Elizabeth Csaszar; Mei Yu; Quaid Morris; Peter W. Zandstra (PLoS Comput. Biol., 2012)

Probabilistic Models for the Analysis of Gene Expression Profiles. - Gerald T. Quon (2013)

Diversifying Sparsity Using Variational Determinantal Point Processes. - Nematollah Kayhan Batmanghelich; Gerald T. Quon; Alex Kulesza; Manolis Kellis; Polina Golland; Luke Bornn (CoRR, 2014)

ISOpureR: an R implementation of a computational purification algorithm of mixed tumour profiles. - Catalina V. Anghel; Gerald T. Quon; Syed Haider; Francis Nguyen; Amit G. Deshwar; Quaid Morris; Paul C. Boutros (BMC Bioinform., 2015)

Integrative analysis of 111 reference human epigenomes Open. - Roadmap Epigenomics Consortium; Anshul Kundaje; Wouter Meuleman; Jason Ernst; Misha Bilenky; Angela Yen; Alireza Heravi Moussavi; Pouya Kheradpour; ZhiZhuo Zhang; Jianrong Wang; Michael J. Ziller; Viren Amin; et al. (Nat., 2015)

Spectral Alignment of Networks. - Soheil Feizi; Gerald T. Quon; Mariana Recamonde Mendoza; Muriel Médard; Manolis Kellis; Ali Jadbabaie (CoRR, 2016)

Network Infusion to Infer Information Sources in Networks. - Soheil Feizi; Muriel Médard; Gerald T. Quon; Manolis Kellis; Ken Duffy (IEEE Trans. Netw. Sci. Eng., 2019)

Spectral Alignment of Graphs. - Soheil Feizi; Gerald T. Quon; Mariana Recamonde Mendoza; Muriel Médard; Manolis Kellis; Ali Jadbabaie (IEEE Trans. Netw. Sci. Eng., 2020)