The relevance of neck linker docking in the motility of kinesin. - András Czövek; Gergely J. Szöllosi; Imre Derényi (Biosyst., 2008)

An Efficient Algorithm for Gene/Species Trees Parsimonious Reconciliation with Losses, Duplications and Transfers. - Jean-Philippe Doyon; Céline Scornavacca; K. Yu. Gorbunov; Gergely J. Szöllosi; Vincent Ranwez; Vincent Berry (RECOMB-CG, 2010)

Evolution of gene neighborhoods within reconciled phylogenies. - Sèverine Bérard; Coralie Gallien; Bastien Boussau; Gergely J. Szöllosi; Vincent Daubin; Eric Tannier (Bioinform., 2012)

Lateral gene transfer, rearrangement, reconciliation. - Murray Patterson; Gergely J. Szöllosi; Vincent Daubin; Eric Tannier (BMC Bioinform., 2013)

Joint amalgamation of most parsimonious reconciled gene trees. - Céline Scornavacca; Edwin Jacox; Gergely J. Szöllosi (Bioinform., 2015)

ecceTERA: comprehensive gene tree-species tree reconciliation using parsimony. - Edwin Jacox; Cédric Chauve; Gergely J. Szöllosi; Yann Ponty; Céline Scornavacca (Bioinform., 2016)

RecPhyloXML: a format for reconciled gene trees. - Wandrille Duchemin; Guillaume Gence; Anne-Muriel Arigon Chifolleau; Lars Arvestad; Mukul S. Bansal; Vincent Berry; Bastien Boussau; François Chevenet; Nicolas Comte; Adrián A. Davín; Christophe Dessimoz; David Dylus; et al. (Bioinform., 2018)

Zombi: a phylogenetic simulator of trees, genomes and sequences that accounts for dead linages. - Adrián A. Davín; Théo Tricou; Eric Tannier; Damien M. de Vienne; Gergely J. Szöllosi (Bioinform., 2020)

Distinguishing excess mutations and increased cell death based on variant allele frequencies. - Gergely Tibély; Dominik Schrempf; Imre Derényi; Gergely J. Szöllosi (PLoS Comput. Biol., 2022)