YPL.db: the Yeast Protein Localization database. - Georg Habeler; Klaus Natter; Gerhard G. Thallinger; Matthew E. Crawford; Sepp D. Kohlwein; Zlatko Trajanoski (Nucleic Acids Res., 2002)

ArrayNorm: comprehensive normalization and analysis of microarray data. - Roland Pieler; Fátima Sánchez-Cabo; Hubert Hackl; Gerhard G. Thallinger; Zlatko Trajanoski (Bioinform., 2004)

MASPECTRAS: a platform for management and analysis of proteomics LC-MS/MS data. - Jürgen Hartler; Gerhard G. Thallinger; Gernot Stocker; Alexander Sturn; Thomas R. Burkard; Erik Körner; Robert Rader; Andreas Schmidt 009; Karl Mechtler; Zlatko Trajanoski (BMC Bioinform., 2007)

TAMEE: data management and analysis for tissue microarrays. - Gerhard G. Thallinger; Kerstin Baumgartner; Martin Pirklbauer; Martina Uray; Elke Pauritsch; Gabor Mehes; Charles R. Buck; Kurt Zatloukal; Zlatko Trajanoski (BMC Bioinform., 2007)

QPCR: Application for real-time PCR data management and analysis. - Stephan Pabinger; Gerhard G. Thallinger; René Snajder; Heiko Eichhorn; Robert Rader; Zlatko Trajanoski (BMC Bioinform., 2009)

VASCo: computation and visualization of annotated protein surface contacts. - Georg Steinkellner; Robert Rader; Gerhard G. Thallinger; Christoph Kratky; Karl Gruber (BMC Bioinform., 2009)

Lipid Data Analyzer: unattended identification and quantitation of lipids in LC-MS data. - Jürgen Hartler; Martin Trötzmüller; Chandramohan Chitraju; Friedrich Spener; Harald C. Köfeler; Gerhard G. Thallinger (Bioinform., 2011)

MuteinDB: the mutein database linking substrates, products and enzymatic reactions directly with genetic variants of enzymes. - Andreas Braun; Bettina Halwachs; Martina Geier; Katrin Weinhandl; Michael Guggemos; Jan Marienhagen; Anna Joëlle Ruff; Ulrich Schwaneberg; Vincent Rabin; Daniel E. Torres Pazmiño; Gerhard G. Thallinger; Anton Glieder (Database J. Biol. Databases Curation, 2012)

A sequence comparison and gene expression data integration add-on for the Pathway Tools software. - Peter M. Krempl; Jürgen Mairhofer; Gerald Striedner; Gerhard G. Thallinger (Bioinform., 2012)

Bioinformatics tools and challenges in structural analysis of lipidomics MS/MS data. - Jürgen Hartler; Ravi Tharakan; Harald C. Köfeler; David R. Graham; Gerhard G. Thallinger (Briefings Bioinform., 2013)

Integrative omics analysis. A study based on Plasmodium falciparum mRNA and protein data. - Oana A. Tomescu; Diethard Mattanovich; Gerhard G. Thallinger (BMC Syst. Biol., 2014)

Dimension reduction techniques for the integrative analysis of multi-omics data. - Chen Meng; Oana A. Zeleznik; Gerhard G. Thallinger; Bernhard Küster; Amin Moghaddas Gholami; Aedín C. Culhane (Briefings Bioinform., 2016)

Reconstruction of Mitochondrial Genotypes from Diverse next Generation Sequencing Datasets. - Peter Ulz; Michael R. Speicher; Gerhard G. Thallinger (BIOINFORMATICS, 2017)

A Comprehensive FXR Signaling Atlas Derived from Pooled ChIP-seq Data. - Emilian Jungwirth; Katrin Panzitt; Hanns-Ulrich Marschall; Martin Wagner; Gerhard G. Thallinger (dHealth, 2019)

Comparison and evaluation of integrative methods for the analysis of multilevel omics data: a study based on simulated and experimental cancer data. - Bettina M. Pucher; Oana A. Zeleznik; Gerhard G. Thallinger (Briefings Bioinform., 2019)

Identification and Quantification of Oxidized Lipids in LC-MS Lipidomics Data. - Christoph A. Krettler; Jürgen Hartler; Gerhard G. Thallinger (dHealth, 2020)

A map of mass spectrometry-based in silico fragmentation prediction and compound identification in metabolomics. - Christoph A. Krettler; Gerhard G. Thallinger (Briefings Bioinform., 2021)

Non-linear fitting with joint spatial regularization in arterial spin labeling. - Oliver Maier; Stefan M. Spann; Daniela Pinter; Thomas Gattringer; Nicole Hinteregger; Gerhard G. Thallinger; Christian Enzinger; Josef Pfeuffer; Kristian Bredies; Rudolf Stollberger (Medical Image Anal., 2021)