Streamlining differential exon and 3′ UTR usage with diffUTR. - Stefan Gerber; Gerhard Schratt; Pierre-Luc Germain (BMC Bioinform., 2021)

scanMiR: a biochemically based toolkit for versatile and efficient microRNA target prediction. - Michael Soutschek; Fridolin Gross; Gerhard Schratt; Pierre-Luc Germain (Bioinform., 2022)

enrichMiR predicts functionally relevant microRNAs based on target collections. - Michael Soutschek; Tomás Germade; Pierre-Luc Germain; Gerhard Schratt (Nucleic Acids Res., 2022)