PESI - An intelligent system for Prediction of Enzyme - Substrate Interactions based on experimental constraints. - German Nudelman; Tamar Tennenbaum; Ramit Mehr; Ron Unger (Silico Biol., 2002)

Antigen Epitope Density Dependent Cell Surface Discrimination and the Role of the Lipid Rafts. - German Nudelman; Yoram Louzoun (METMBS, 2004)

BioPP: a tool for web-publication of biological networks. - Ganesh A. Viswanathan; German Nudelman; Sonali Patil; Stuart C. Sealfon (BMC Bioinform., 2007)

Getting Started in Biological Pathway Construction and Analysis. - Ganesh A. Viswanathan; Jeremy Seto; Sonali Patil; German Nudelman; Stuart C. Sealfon (PLoS Comput. Biol., 2008)

Signaling network of dendritic cells in response to pathogens: a community-input supported knowledgebase. - Sonali Patil; Hanna Pincas; Jeremy Seto; German Nudelman; Irina Nudelman; Stuart C. Sealfon (BMC Syst. Biol., 2010)

Reconstruction of regulatory networks through temporal enrichment profiling and its application to H1N1 influenza viral infection. - Elena Zaslavsky; German Nudelman; Susanna Marquez; Uri Hershberg; Boris M. Hartmann; Juilee Thakar; Stuart C. Sealfon; Steven H. Kleinstein (BMC Bioinform., 2013)

Noise propagation through extracellular signaling leads to fluctuations in gene expression. - Omar P. Tabbaa; German Nudelman; Stuart C. Sealfon; Fernand Hayot; Ciriyam Jayaprakash (BMC Syst. Biol., 2013)

MOCCASIN: converting MATLAB ODE models to SBML. - Harold F. Gómez; Michael Hucka; Sarah M. Keating; German Nudelman; Dagmar Iber; Stuart C. Sealfon (Bioinform., 2016)

Mapping disease regulatory circuits at cell-type resolution from single-cell multiomics data. - Xi Chen; Yuan Wang 084; Antonio Cappuccio; Wan-Sze Cheng; Frederique Ruf Zamojski; Venugopalan D. Nair; Clare M. Miller; Aliza B. Rubenstein; German Nudelman; Alicja Tadych; Chandra L. Theesfeld; Alexandria Vornholt; et al. (Nat. Comput. Sci., 2023)

Author Correction: Mapping disease regulatory circuits at cell-type resolution from single-cell multiomics data. - Xi Chen; Yuan Wang 084; Antonio Cappuccio; Wan-Sze Cheng; Frederique Ruf Zamojski; Venugopalan D. Nair; Clare M. Miller; Aliza B. Rubenstein; German Nudelman; Alicja Tadych; Chandra L. Theesfeld; Alexandria Vornholt; et al. (Nat. Comput. Sci., 2023)