Gene expression trends and protein features effectively complement each other in gene function prediction. - Krzysztof Wabnik; Torgeir R. Hvidsten; Anna M. Kedzierska; Jelle Van Leene; Geert De Jaeger; Gerrit T. S. Beemster; Henryk Jan Komorowski; Martin T. R. Kuiper (Bioinform., 2009)

Putting Theory to the Test: Which Regulatory Mechanisms Can Drive Realistic Growth of a Root? - Dirk De Vos; Kris Vissenberg; Jan Broeckhove; Gerrit T. S. Beemster (PLoS Comput. Biol., 2014)

Simulating leaf growth dynamics through Metropolis-Monte Carlo based energy minimization. - Dirk De Vos; Emil De Borger; Jan Broeckhove; Gerrit T. S. Beemster (J. Comput. Sci., 2015)

Simulation of regulatory strategies in a morphogen based model of Arabidopsis leaf growth. - Elise J. Kuylen; Gerrit T. S. Beemster; Jan Broeckhove; Dirk De Vos (ICCS, 2017)