Active contour models: application to oral lesion detection in color images. - Ghassan Hamarneh; Artur Chodorowski; Tomas Gustavsson (SMC, 2000)

Statistically constrained snake deformations. - Ghassan Hamarneh; Tomas Gustavsson (SMC, 2000)

Deformable Spatio-Temporal Shape Models: Extending ASM to 2D+Time. - Ghassan Hamarneh; Tomas Gustavsson (BMVC, 2001)

Deformable Organisms for Automatic Medical Image Analysis. - Ghassan Hamarneh; Tim McInerney; Demetri Terzopoulos (MICCAI, 2001)

Towards Intelligent Deformable Models for Medical Image Analysis. - Ghassan Hamarneh (2001)

Deformable organisms for automatic medical image analysis. - Tim McInerney; Ghassan Hamarneh; Martha Elizabeth Shenton; Demetri Terzopoulos (Medical Image Anal., 2002)

Physics-based shape deformations for medical image analysis. - Ghassan Hamarneh; Tim McInerney (Image Processing: Algorithms and Systems, 2003)

Segmentation, Registration, and Deformation Analysis of 3D MR Images of Mice. - Ghassan Hamarneh; X. Josette Chen; Brian Neiman; Jeff Henderson; R. Mark Henkelman (MICCAI (2), 2003)

Anatomically Guided Registration of Whole Body Mouse MR Images. - Natasa Kovacevic; Ghassan Hamarneh; R. Mark Henkelman (MICCAI (2), 2003)

Level Set Curve Matching and Particle Image Velocimetry for Resolving Chemistry and Turbulence Interactions in Propagating Flames. - Rafeef Abugharbieh; Ghassan Hamarneh; Tomas Gustavsson; Clemens Kaminski (J. Math. Imaging Vis., 2003)

Medial Profiles for Modeling Deformation and Statistical Analysis of Shape and their Use in Medical Image Segmentation. - Ghassan Hamarneh; Rafeef Abugharbieh; Tim McInerney (Int. J. Shape Model., 2004)

Deformable spatio-temporal shape models: extending active shape models to 2D+time. - Ghassan Hamarneh; Tomas Gustavsson (Image Vis. Comput., 2004)

Modeling Prior Shape and Appearance Knowledge in Watershed Segmentat. - Xiaoxing Li; Ghassan Hamarneh (CRV, 2005)

Color lesion boundary detection using live wire. - Artur Chodorowski; Ulf Mattsson; Morgan Langille; Ghassan Hamarneh (Image Processing, 2005)

Physics-based deformable organisms for medical image analysis. - Ghassan Hamarneh; Chris McIntosh (Image Processing, 2005)

3D live-wire-based semi-automatic segmentation of medical images. - Ghassan Hamarneh; Johnson Yang; Chris McIntosh; Morgan Langille (Image Processing, 2005)

Vessel Crawlers: 3D Physically-based Deformable Organisms for Vasculature Segmentation and Analysis. - Chris McIntosh; Ghassan Hamarneh (CVPR (1), 2006)

Spinal Crawlers: Deformable Organisms for Spinal Cord Segmentation and Analysis. - Chris McIntosh; Ghassan Hamarneh (MICCAI (1), 2006)

MATLAB-ITK interface for medical image filtering, segmentation, and registration. - Vincent Chu; Ghassan Hamarneh (Image Processing, 2006)

Visualization and exploration of time-varying medical image data sets. - Zhe Fang; Torsten Möller; Ghassan Hamarneh; Anna Celler (Graphics Interface, 2007)

Visualizing Diffusion Tensor Dissimilarity using an ICA Based Perceptual Colour Metric. - Mark S. Drew; Ghassan Hamarneh (CIC, 2007)

N-Sift: N-Dimensional Scale Invariant Feature Transform for Matching Medical Images. - Warren Cheung; Ghassan Hamarneh (ISBI, 2007)

Quantification and Visualization of Localized and Intuitive Shape Variability Using a Novel Medial-Based Shape Representation. - Ghassan Hamarneh; Aaron D. Ward; Richard Frank (ISBI, 2007)

Is a Single Energy Functional Sufficient? Adaptive Energy Functionals and Automatic Initialization. - Chris McIntosh; Ghassan Hamarneh (MICCAI (2), 2007)

Live-Vessel: Extending Livewire for Simultaneous Extraction of Optimal Medial and Boundary Paths in Vascular Images. - Kelvin Poon; Ghassan Hamarneh; Rafeef Abugharbieh (MICCAI (2), 2007)

Simultaneous Segmentation, Kinetic Parameter Estimation, and Uncertainty Visualization of Dynamic PET Images. - Ahmed Saad; Benjamin Smith 002; Ghassan Hamarneh; Torsten Möller (MICCAI (2), 2007)

Statistical Shape Modeling Using MDL Incorporating Shape, Appearance, and Expert Knowledge. - Aaron D. Ward; Ghassan Hamarneh (MICCAI (1), 2007)

Tensor dissimilarity based adaptive seeding algorithm for DT-MRI visualization with streamtubes. - Yonas T. Weldeselassie; Ghassan Hamarneh; Daniel Weiskopf (Image-Guided Procedures, 2007)

Segmentation of complex objects with non-spherical topologies from volumetric medical images using 3D livewire. - Kelvin Poon; Ghassan Hamarneh; Rafeef Abugharbieh (Image Processing, 2007)

3D surface parameterization using manifold learning for medial shape representation. - Aaron D. Ward; Ghassan Hamarneh (Image Processing, 2007)

DT-MRI segmentation using graph cuts. - Yonas T. Weldeselassie; Ghassan Hamarneh (Image Processing, 2007)

Contour Correspondence via Ant Colony Optimization. - Oliver van Kaick; Ghassan Hamarneh; Hao Zhang 002; Paul Wighton (PG, 2007)

Bilateral Filtering of Diffusion Tensor Magnetic Resonance Images. - Ghassan Hamarneh; Judith Hradsky (IEEE Trans. Image Process., 2007)

SMRFI: Shape matching via registration of vector-valued feature images. - Lisa Tang; Ghassan Hamarneh (CVPR, 2008)

Quaternion Color Curvature. - Lilong Shi; Brian V. Funt; Ghassan Hamarneh (CIC, 2008)

Simulation of Ground-Truth Validation Data Via Physically- and Statistically-Based Warps. - Ghassan Hamarneh; Preet Jassi; Lisa Tang (MICCAI (1), 2008)

Kinetic Modeling Based Probabilistic Segmentation for Molecular Images. - Ahmed Saad; Ghassan Hamarneh; Torsten Möller; Benjamin Smith 002 (MICCAI (1), 2008)

Efficient interactive 3D Livewire segmentation of complex objects with arbitrary topology. - Miranda Poon; Ghassan Hamarneh; Rafeef Abugharbieh (Comput. Medical Imaging Graph., 2008)

Validation of mutual information-based registration of CT and bone SPECT images in dual-isotope studies. - Lisa Tang; Ghassan Hamarneh; Anna Celler (Comput. Methods Programs Biomed., 2008)

Development of NEMA-based Software for Gamma Camera Quality Control. - Andrew Rova; Anna Celler; Ghassan Hamarneh (J. Digit. Imaging, 2008)

3D Bicipital Groove Shape Analysis and Relationship to Tendopathy. - Aaron D. Ward; Ghassan Hamarneh; Mark E. Schweitzer (J. Digit. Imaging, 2008)

A graph-based approach to skin mole matching incorporating template-normalized coordinates. - Hengameh Mirzaalian; Ghassan Hamarneh; Tim K. Lee (CVPR, 2009)

Multi-label MRF Optimization via a Least Squares s - t Cut. - Ghassan Hamarneh (ISVC (1), 2009)

Optimal Weights for Convex Functionals in Medical Image Segmentation. - Chris McIntosh; Ghassan Hamarneh (ISVC (1), 2009)

Adaptive Contextual Energy Parameterization for Automated Image Segmentation. - Josna Rao; Ghassan Hamarneh; Rafeef Abugharbieh (ISVC (1), 2009)

Hands-free interactive image segmentation using eyegaze. - Mahya Sadeghi; Geoffrey Tien; Ghassan Hamarneh; M. Stella Atkins (Computer-Aided Diagnosis, 2009)

Intra-retinal Layer Segmentation in Optical Coherence Tomography Using an Active Contour Approach. - Azadeh Yazdanpanah; Ghassan Hamarneh; Benjamin Smith 002; Marinko Sarunic (MICCAI (1), 2009)

Automatic Spatially-Adaptive Balancing of Energy Terms for Image Segmentation - Josna Rao; Ghassan Hamarneh; Rafeef Abugharbieh (CoRR, 2009)

Multi-Label MRF Optimization via Least Squares s-t Cuts - Ghassan Hamarneh (CoRR, 2009)

Watershed segmentation using prior shape and appearance knowledge. - Ghassan Hamarneh; Xiaoxing Li (Image Vis. Comput., 2009)

n -SIFT: n -Dimensional Scale Invariant Feature Transform. - Warren Cheung; Ghassan Hamarneh (IEEE Trans. Image Process., 2009)

Vessel scale-selection using MRF optimization. - Hengameh Mirzaalian; Ghassan Hamarneh (CVPR, 2010)

Group MRF for fMRI activation detection. - Bernard Ng; Rafeef Abugharbieh; Ghassan Hamarneh (CVPR, 2010)

Graph-based tracking of the tongue contour in ultrasound sequences with adaptive temporal regularization. - Lisa Tang; Ghassan Hamarneh (CVPR Workshops, 2010)

Adaptive Regularization for Image Segmentation Using Local Image Curvature Cues. - Josna Rao; Rafeef Abugharbieh; Ghassan Hamarneh (ECCV (4), 2010)

A New Preprocessing Filter for Digital Mammograms. - Peyman Rahmati; Ghassan Hamarneh; Doron Nussbaum; Andy Adler (ICISP, 2010)

Fast Random Walker with Priors Using Precomputation for Interactive Medical Image Segmentation. - Shawn Andrews; Ghassan Hamarneh; Ahmed Saad (MICCAI (3), 2010)

Probabilistic Multi-Shape Representation Using an Isometric Log-Ratio Mapping. - Neda Changizi; Ghassan Hamarneh (MICCAI (3), 2010)

Extraction of the Plane of Minimal Cross-Sectional Area of the Corpus Callosum Using Template-Driven Segmentation. - Neda Changizi; Ghassan Hamarneh; Omer Ishaq; Aaron D. Ward; Roger C. Tam (MICCAI (3), 2010)

Detecting Brain Activation in fMRI Using Group Random Walker. - Bernard Ng; Ghassan Hamarneh; Rafeef Abugharbieh (MICCAI (2), 2010)

Generalized Sparse Classifiers for Decoding Cognitive States in fMRI. - Bernard Ng; Arash Vahdat; Ghassan Hamarneh; Rafeef Abugharbieh (MLMI, 2010)

Spotlight: Automated Confidence-Based User Guidance for Increasing Efficiency in Interactive 3D Image Segmentation. - Andrew Top; Ghassan Hamarneh; Rafeef Abugharbieh (MCV, 2010)

Reliability-Driven, Spatially-Adaptive Regularization for Deformable Registration. - Lisa Tang; Ghassan Hamarneh; Rafeef Abugharbieh (WBIR, 2010)

ProbExplorer: Uncertainty-guided Exploration and Editing of Probabilistic Medical Image Segmentation. - Ahmed Saad; Torsten Möller; Ghassan Hamarneh (Comput. Graph. Forum, 2010)

VascuSynth: Simulating vascular trees for generating volumetric image data with ground-truth segmentation and tree analysis. - Ghassan Hamarneh; Preet Jassi (Comput. Medical Imaging Graph., 2010)

Dual-isotope Acquisition for CT-SPECT Registration of Infection Studies. - Lisa Tang; Ghassan Hamarneh; Anna Celler (J. Digit. Imaging, 2010)

The Groupwise Medial Axis Transform for Fuzzy Skeletonization and Pruning. - Aaron D. Ward; Ghassan Hamarneh (IEEE Trans. Pattern Anal. Mach. Intell., 2010)

Exploration and Visualization of Segmentation Uncertainty using Shape and Appearance Prior Information. - Ahmed Saad; Ghassan Hamarneh; Torsten Möller (IEEE Trans. Vis. Comput. Graph., 2010)

Evolutionary Deformable Models for Medical Image Segmentation: A Genetic Algorithm Approach to Optimizing Learned, Intuitive, and Localized Medial-based Shape Deformation. - Chris McIntosh; Ghassan Hamarneh (Genetic and Evolutionary Computation: Medical Applications, 2011)

Consistent Information Content Estimation for Diffusion Tensor MR Images. - Brian G. Booth; Ghassan Hamarneh (HISB, 2011)

Spinal Cord Segmentation for Volume Estimation in Healthy and Multiple Sclerosis Subjects Using Crawlers and Minimal Paths. - Chris McIntosh; Ghassan Hamarneh; Matthew Toom; Roger C. Tam (HISB, 2011)

Convex multi-region probabilistic segmentation with shape prior in the isometric log-ratio transformation space. - Shawn Andrews; Chris McIntosh; Ghassan Hamarneh (ICCV, 2011)

Exact integration of diffusion orientation distribution functions for graph-based diffusion MRI analysis. - Brian G. Booth; Ghassan Hamarneh (ISBI, 2011)

Probabilistic Multi-shape Segmentation of Knee Extensor and Flexor Muscles. - Shawn Andrews; Ghassan Hamarneh; Azadeh Yazdanpanah; Bahareh HajGhanbari; W. Darlene Reid (MICCAI (3), 2011)

Detecting Structure in Diffusion Tensor MR Images. - K. Krishna Nand; Rafeef Abugharbieh; Brian G. Booth; Ghassan Hamarneh (MICCAI (2), 2011)

A Machine Learning Approach to Tongue Motion Analysis in 2D Ultrasound Image Sequences. - Lisa Tang; Ghassan Hamarneh; Tim Bressmann (MLMI, 2011)

Active Learning for Interactive 3D Image Segmentation. - Andrew Top; Ghassan Hamarneh; Rafeef Abugharbieh (MICCAI (3), 2011)

Prior Knowledge for Part Correspondence. - Oliver van Kaick; Andrea Tagliasacchi; Oana Sidi; Hao Zhang 002; Daniel Cohen-Or; Lior Wolf; Ghassan Hamarneh (Comput. Graph. Forum, 2011)

A Survey on Shape Correspondence. - Oliver van Kaick; Hao Zhang 002; Ghassan Hamarneh; Daniel Cohen-Or (Comput. Graph. Forum, 2011)

VASE: Volume-Aware Surface Evolution for Surface Reconstruction from Incomplete Point Clouds. - Andrea Tagliasacchi; Matt Olson; Hao Zhang 002; Ghassan Hamarneh; Daniel Cohen-Or (Comput. Graph. Forum, 2011)

Perception-Based Visualization of Manifold-Valued Medical Images Using Distance-Preserving Dimensionality Reduction. - Ghassan Hamarneh; Chris McIntosh; Mark S. Drew (IEEE Trans. Medical Imaging, 2011)

Segmentation of Intra-Retinal Layers From Optical Coherence Tomography Images Using an Active Contour Approach. - Azadeh Yazdanpanah; Ghassan Hamarneh; Benjamin R. Smith; Marinko Sarunic (IEEE Trans. Medical Imaging, 2011)

Diffusion tensor image processing using biquaternions. - K. Krishna Nand; Ghassan Hamarneh; Rafeef Abugharbieh (ISBI, 2012)

Locally-adaptive similarity metric for deformable medical image registration. - Lisa Tang; Alfred O. Hero III; Ghassan Hamarneh (ISBI, 2012)

Uncertainty-Based Feature Learning for Skin Lesion Matching Using a High Order MRF Optimization Framework. - Hengameh Mirzaalian; Tim K. Lee; Ghassan Hamarneh (MICCAI (2), 2012)

Vascular bifurcation detection in scale-space. - Daniel-Marian Baboiu; Ghassan Hamarneh (MMBIA, 2012)

Multi-region competitive tractography via graph-based random walks. - Brian G. Booth; Ghassan Hamarneh (MMBIA, 2012)

Learning features for streak detection in dermoscopic color images using localized radial flux of principal intensity curvature. - Hengameh Mirzaalian; Tim K. Lee; Ghassan Hamarneh (MMBIA, 2012)

Iterative segmentation and motion correction for dynamic PET images based on radioactive tracer kinetics. - Hengameh Mirzaalian; Ahmed Saad; Ghassan Hamarneh (MMBIA, 2012)

Spatial dispersion of lesions as a surrogate biomarker for disability in multiple sclerosis. - Fahime Sheikhzadeh; Roger C. Tam; Ghassan Hamarneh (MMBIA, 2012)

Mammography segmentation with maximum likelihood active contours. - Peyman Rahmati; Andy Adler; Ghassan Hamarneh (Medical Image Anal., 2012)

Tongue contour tracking in dynamic ultrasound via higher-order MRFs and efficient fusion moves. - Lisa Tang; Tim Bressmann; Ghassan Hamarneh (Medical Image Anal., 2012)

Medial-Based Deformable Models in Nonconvex Shape-Spaces for Medical Image Segmentation. - Chris McIntosh; Ghassan Hamarneh (IEEE Trans. Medical Imaging, 2012)

Modeling Brain Activation in fMRI Using Group MRF. - Bernard Ng; Ghassan Hamarneh; Rafeef Abugharbieh (IEEE Trans. Medical Imaging, 2012)

Bounded Labeling Function for Global Segmentation of Multi-part Objects with Geometric Constraints. - Masoud S. Nosrati; Shawn Andrews; Ghassan Hamarneh (ICCV, 2013)

K-confidence: Assessing uncertainty in tractography using K optimal paths. - Colin J. Brown; Brian G. Booth; Ghassan Hamarneh (ISBI, 2013)

Globally optimal spinal cord segmentation using a minimal path in high dimensions. - Jeremy Kawahara; Chris McIntosh; Roger C. Tam; Ghassan Hamarneh (ISBI, 2013)

Uncertainty-Encoded Augmented Reality for Robot-Assisted Partial Nephrectomy: A Phantom Study. - Alborz Amir-Khalili; Masoud S. Nosrati; Jean-Marc Peyrat; Ghassan Hamarneh; Rafeef Abugharbieh (AE-CAI, 2013)

3D Surface Reconstruction of Organs Using Patient-Specific Shape Priors in Robot-Assisted Laparoscopic Surgery. - Alborz Amir-Khalili; Jean-Marc Peyrat; Ghassan Hamarneh; Rafeef Abugharbieh (Abdominal Imaging, 2013)

A Cross-Sectional Piecewise Constant Model for Segmenting Highly Curved Fiber Tracts in Diffusion MR Images. - Brian G. Booth; Ghassan Hamarneh (MICCAI (3), 2013)

Uncertainty in Tractography via Tract Confidence Regions. - Colin J. Brown; Brian G. Booth; Ghassan Hamarneh (CDMRI/MMBC@MICCAI, 2013)

Augmenting Auto-context with Global Geometric Features for Spinal Cord Segmentation. - Jeremy Kawahara; Chris McIntosh; Roger C. Tam; Ghassan Hamarneh (MLMI, 2013)

Improving Probabilistic Image Registration via Reinforcement Learning and Uncertainty Evaluation. - Tayebeh Lotfi; Lisa Tang; Shawn Andrews; Ghassan Hamarneh (MLMI, 2013)

Decision Forests with Spatio-Temporal Features for Graph-Based Tumor Segmentation in 4D Lung CT. - Hamidreza Mirzaei; Lisa Tang; René Werner; Ghassan Hamarneh (MLMI, 2013)

Segmentation of Cells with Partial Occlusion and Part Configuration Constraint Using Evolutionary Computation. - Masoud S. Nosrati; Ghassan Hamarneh (MICCAI (1), 2013)

Random Walks with Efficient Search and Contextually Adapted Image Similarity for Deformable Registration. - Lisa Y. W. Tang; Ghassan Hamarneh (MICCAI (2), 2013)

Bilateral Maps for Partial Matching. - Oliver van Kaick; Hao Zhang 002; Ghassan Hamarneh (Comput. Graph. Forum, 2013)

Fast random walker image registration using precomputation. - Shawn Andrews; Lisa Tang; Ghassan Hamarneh (ISBI, 2014)

DTI-DeformIt: Generating ground-truth validation data for diffusion tensor image analysis tasks. - Brian G. Booth; Ghassan Hamarneh (ISBI, 2014)

Biomechanical kidney model for predicting tumor displacement in the presence of external pressure load. - Ivan Figueroa-Garcia; Jean-Marc Peyrat; Ghassan Hamarneh; Rafeef Abugharbieh (ISBI, 2014)

Random walker image registration with cost aggregation. - Lisa Ying Wai Tang; Ghassan Hamarneh (ISBI, 2014)

Bifurcation detection in 3D vascular images using novel features and random forest. - Mengliu Zhao; Ghassan Hamarneh (ISBI, 2014)

Auto Localization and Segmentation of Occluded Vessels in Robot-Assisted Partial Nephrectomy. - Alborz Amir-Khalili; Jean-Marc Peyrat; Julien Abinahed; Osama Al-Alao; Abdulla Al-Ansari; Ghassan Hamarneh; Rafeef Abugharbieh (MICCAI (1), 2014)

Topology Preservation and Anatomical Feasibility in Random Walker Image Registration. - Shawn Andrews; Lisa Tang; Ghassan Hamarneh (MICCAI (1), 2014)

Automatic Labelling of Tumourous Frames in Free-Hand Laparoscopic Ultrasound Video. - Jeremy Kawahara; Jean-Marc Peyrat; Julien Abinahed; Osama Al-Alao; Abdulla Al-Ansari; Rafeef Abugharbieh; Ghassan Hamarneh (MICCAI (2), 2014)

Efficient Multi-organ Segmentation in Multi-view Endoscopic Videos Using Pre-operative Priors. - Masoud S. Nosrati; Jean-Marc Peyrat; Julien Abinahed; Osama Al-Alao; Abdulla Al-Ansari; Rafeef Abugharbieh; Ghassan Hamarneh (MICCAI (2), 2014)

Structural network analysis of brain development in young preterm neonates. - Colin J. Brown; Steven P. Miller; Brian G. Booth; Shawn Andrews; Vann Chau; Kenneth J. Poskitt; Ghassan Hamarneh (NeuroImage, 2014)

Arterial Mechanical Motion Estimation Based on a Semi-Rigid Body Deformation Approach. - Pablo Guzmán; Ghassan Hamarneh; Rafael Ros; Eduardo Ros 001 (Sensors, 2014)

Hair Enhancement in Dermoscopic Images Using Dual-Channel Quaternion Tubularness Filters and MRF-Based Multilabel Optimization. - Hengameh Mirzaalian; Tim K. Lee; Ghassan Hamarneh (IEEE Trans. Image Process., 2014)

Spatial Normalization of Human Back Images for Dermatological Studies. - Hengameh Mirzaalian; Tim K. Lee; Ghassan Hamarneh (IEEE J. Biomed. Health Informatics, 2014)

The Isometric Log-Ratio Transform for Probabilistic Multi-Label Anatomical Shape Representation. - Shawn Andrews; Neda Changizi; Ghassan Hamarneh (IEEE Trans. Medical Imaging, 2014)

Local Optimization Based Segmentation of Spatially-Recurring, Multi-Region Objects With Part Configuration Constraints. - Masoud S. Nosrati; Ghassan Hamarneh (IEEE Trans. Medical Imaging, 2014)

Examining visible articulatory features in clear and conversational speech. - Lisa Tang; Beverly Hannah; Allard Jongman; Joan A. Sereno; Yue Wang 065; Ghassan Hamarneh (ICPhS, 2015)

Skin lesion matching using Jacobian based descriptors for topology preservation. - Hengameh Mirzaalian; Tim K. Lee; Ghassan Hamarneh (ISBI, 2015)

Segmentation of overlapping cervical cells: A variational method with star-shape prior. - Masoud S. Nosrati; Ghassan Hamarneh (ISBI, 2015)

Random walker image registration with inverse consistency. - Lisa Y. W. Tang; Shawn Andrews; Ghassan Hamarneh (ISBI, 2015)

Automatic Vessel Segmentation from Pulsatile Radial Distension. - Alborz Amir-Khalili; Ghassan Hamarneh; Rafeef Abugharbieh (MICCAI (3), 2015)

Automatic Diagnosis of Ovarian Carcinomas via Sparse Multiresolution Tissue Representation. - Aïcha BenTaieb; Hector Li-Chang; David G. Huntsman; Ghassan Hamarneh (MICCAI (1), 2015)

Prediction of Motor Function in Very Preterm Infants Using Connectome Features and Local Synthetic Instances. - Colin J. Brown; Steven P. Miller; Brian G. Booth; Kenneth J. Poskitt; Vann Chau; Anne R. Synnes; Jill G. Zwicker; Ruth E. Grunau; Ghassan Hamarneh (MICCAI (1), 2015)

Corpus Callosum Segmentation in MS Studies Using Normal Atlases and Optimal Hybridization of Extrinsic and Intrinsic Image Cues. - Lisa Y. W. Tang; Ghassan Hamarneh; Anthony Traboulsee; David K. B. Li; Roger C. Tam (MICCAI (3), 2015)

Multi-Region Probabilistic Dice Similarity Coefficient using the Aitchison Distance and Bipartite Graph Matching. - Shawn Andrews; Ghassan Hamarneh (CoRR, 2015)

Automatic segmentation of occluded vasculature via pulsatile motion analysis in endoscopic robot-assisted partial nephrectomy video. - Alborz Amir-Khalili; Ghassan Hamarneh; Jean-Marc Peyrat; Julien Abinahed; Osama Al-Alao; Abdulla Al-Ansari; Rafeef Abugharbieh (Medical Image Anal., 2015)

Examining visible articulatory features in clear and plain speech. - Lisa Y. W. Tang; Beverly Hannah; Allard Jongman; Joan A. Sereno; Yue Wang 065; Ghassan Hamarneh (Speech Commun., 2015)

The Generalized Log-Ratio Transformation: Learning Shape and Adjacency Priors for Simultaneous Thigh Muscle Segmentation. - Shawn Andrews; Ghassan Hamarneh (IEEE Trans. Medical Imaging, 2015)

Evaluation and Comparison of Anatomical Landmark Detection Methods for Cephalometric X-Ray Images: A Grand Challenge. - Ching-Wei Wang; Cheng-Ta Huang; Meng-Che Hsieh; Chung-Hsing Li; Sheng-Wei Chang; Wei-Cheng Li; Remy Vandaele; Raphaël Marée; Sébastien Jodogne; Pierre Geurts; Cheng Chen 022; Guoyan Zheng; et al. (IEEE Trans. Medical Imaging, 2015)

Sub-Cellular Network Analysis of Ryanodine Receptor Positioning in Control and Phosphorylated States. - Ismail M. Khater; David R. L. Scriven; Edwin D. W. Moore; Ghassan Hamarneh (CinC, 2016)

Multi-loss convolutional networks for gland analysis in microscopy. - Aïcha BenTaieb; Jeremy Kawahara; Ghassan Hamarneh (ISBI, 2016)

Deep features to classify skin lesions. - Jeremy Kawahara; Aïcha BenTaieb; Ghassan Hamarneh (ISBI, 2016)

Enhancing accuracy of symmetric random walker image registration via a novel data-consistency measure. - Lisa Y. W. Tang; Roger C. Tam; Ghassan Hamarneh (ISBI, 2016)

Tumor Lesion Segmentation from 3D PET Using a Machine Learning Driven Active Surface. - Payam Ahmadvand; Nóirín Duggan; François Bénard; Ghassan Hamarneh (MLMI@MICCAI, 2016)

Topology Aware Fully Convolutional Networks for Histology Gland Segmentation. - Aïcha BenTaieb; Ghassan Hamarneh (MICCAI (2), 2016)

Predictive Subnetwork Extraction with Structural Priors for Infant Connectomes. - Colin J. Brown; Steven P. Miller; Brian G. Booth; Jill G. Zwicker; Ruth E. Grunau; Anne R. Synnes; Vann Chau; Ghassan Hamarneh (MICCAI (1), 2016)

Segmentation-Free Estimation of Kidney Volumes in CT with Dual Regression Forests. - Mohammad Arafat Hussain; Ghassan Hamarneh; Timothy W. O'Connell; Mohammed F. Mohammed; Rafeef Abugharbieh (MLMI@MICCAI, 2016)

Multi-resolution-Tract CNN with Hybrid Pretrained and Skin-Lesion Trained Layers. - Jeremy Kawahara; Ghassan Hamarneh (MLMI@MICCAI, 2016)

Endoscopic scene labelling and augmentation using intraoperative pulsatile motion and colour appearance cues with preoperative anatomical priors. - Masoud S. Nosrati; Alborz Amir-Khalili; Jean-Marc Peyrat; Julien Abinahed; Osama Al-Alao; Abdulla Al-Ansari; Rafeef Abugharbieh; Ghassan Hamarneh (Int. J. Comput. Assist. Radiol. Surg., 2016)

Adaptable Precomputation for Random Walker Image Segmentation and Registration. - Shawn Andrews; Ghassan Hamarneh (CoRR, 2016)

Machine Learning on Human Connectome Data from MRI. - Colin J. Brown; Ghassan Hamarneh (CoRR, 2016)

Incorporating prior knowledge in medical image segmentation: a survey. - Masoud S. Nosrati; Ghassan Hamarneh (CoRR, 2016)

Skin lesion tracking using structured graphical models. - Hengameh Mirzaalian; Tim K. Lee; Ghassan Hamarneh (Medical Image Anal., 2016)

STEAM - Statistical Template Estimation for Abnormality Mapping: A personalized DTI analysis technique with applications to the screening of preterm infants. - Brian G. Booth; Steven P. Miller; Colin J. Brown; Kenneth J. Poskitt; Vann Chau; Ruth E. Grunau; Anne R. Synnes; Ghassan Hamarneh (NeuroImage, 2016)

Simultaneous Multi-Structure Segmentation and 3D Nonrigid Pose Estimation in Image-Guided Robotic Surgery. - Masoud S. Nosrati; Rafeef Abugharbieh; Jean-Marc Peyrat; Julien Abinahed; Osama Al-Alao; Abdulla Al-Ansari; Ghassan Hamarneh (IEEE Trans. Medical Imaging, 2016)

Bifurcation Localization in 3D Images via Evolutionary Geometric Deformable Templates. - Mengliu Zhao; Ghassan Hamarneh (CRV, 2017)

Leveraging Tree Statistics for Extracting Anatomical Trees from 3D Medical Images. - Mengliu Zhao; Brandon Miles; Ghassan Hamarneh (CRV, 2017)

Uncertainty Driven Multi-loss Fully Convolutional Networks for Histopathology. - Aïcha BenTaieb; Ghassan Hamarneh (CVII-STENT/LABELS@MICCAI, 2017)

Prediction of Brain Network Age and Factors of Delayed Maturation in Very Preterm Infants. - Colin J. Brown; Kathleen P. Moriarty; Steven P. Miller; Brian G. Booth; Jill G. Zwicker; Ruth E. Grunau; Anne R. Synnes; Vann Chau; Ghassan Hamarneh (MICCAI (1), 2017)

SwifTree: Interactive Extraction of 3D Trees Supporting Gaming and Crowdsourcing. - Mian Huang; Ghassan Hamarneh (CVII-STENT/LABELS@MICCAI, 2017)

Segmentation-Free Kidney Localization and Volume Estimation Using Aggregated Orthogonal Decision CNNs. - Mohammad Arafat Hussain; Alborz Amir-Khalili; Ghassan Hamarneh; Rafeef Abugharbieh (MICCAI (3), 2017)

Collage CNN for Renal Cell Carcinoma Detection from CT. - Mohammad Arafat Hussain; Alborz Amir-Khalili; Ghassan Hamarneh; Rafeef Abugharbieh (MLMI@MICCAI, 2017)

Graph Geodesics to Find Progressively Similar Skin Lesion Images. - Jeremy Kawahara; Kathleen P. Moriarty; Ghassan Hamarneh (GRAIL/MFCA/MICGen@MICCAI, 2017)

Globally-Optimal Anatomical Tree Extraction from 3D Medical Images Using Pictorial Structures and Minimal Paths. - Zahra Mirikharaji; Mengliu Zhao; Ghassan Hamarneh (MICCAI (2), 2017)

Pareto-optimal multi-objective dimensionality reduction deep auto-encoder for mammography classification. - Saeid Asgari Taghanaki; Jeremy Kawahara; Brandon Miles; Ghassan Hamarneh (Comput. Methods Programs Biomed., 2017)

Fully Convolutional Networks to Detect Clinical Dermoscopic Features. - Jeremy Kawahara; Ghassan Hamarneh (CoRR, 2017)

Modelling and extraction of pulsatile radial distension and compression motion for automatic vessel segmentation from video. - Alborz Amir-Khalili; Ghassan Hamarneh; Rafeef Abugharbieh (Medical Image Anal., 2017)

A structured latent model for ovarian carcinoma subtyping from histopathology slides. - Aïcha BenTaieb; Hector Li-Chang; David G. Huntsman; Ghassan Hamarneh (Medical Image Anal., 2017)

BrainNetCNN: Convolutional neural networks for brain networks; towards predicting neurodevelopment. - Jeremy Kawahara; Colin J. Brown; Steven P. Miller; Brian G. Booth; Vann Chau; Ruth E. Grunau; Jill G. Zwicker; Ghassan Hamarneh (NeuroImage, 2017)

Geometry-Based Pectoral Muscle Segmentation From MLO Mammogram Views. - Saeid Asgari Taghanaki; Yonghuai Liu; Brandon Miles; Ghassan Hamarneh (IEEE Trans. Biomed. Eng., 2017)

Evaluation of Three Algorithms for the Segmentation of Overlapping Cervical Cells. - Zhi Lu; Gustavo Carneiro 001; Andrew P. Bradley; Daniela Ushizima; Masoud S. Nosrati; Andrea G. C. Bianchi; Cláudia M. Carneiro; Ghassan Hamarneh (IEEE J. Biomed. Health Informatics, 2017)

Joint Gender-, Tone-, Vowel- Classification Via Novel Hierarchical Classification for Annotation of Monosyllabic Mandarin Word Tokens. - Saurabh Garg 004; Ghassan Hamarneh; Allard Jongman; Joan A. Sereno; Yue Wang 065 (ICASSP, 2018)

Connectome priors in deep neural networks to predict autism. - Colin J. Brown; Jeremy Kawahara; Ghassan Hamarneh (ISBI, 2018)

Generative adversarial networks to segment skin lesions. - Saeed Izadi; Zahra Mirikharaji; Jeremy Kawahara; Ghassan Hamarneh (ISBI, 2018)

Deep auto-context fully convolutional neural network for skin lesion segmentation. - Zahra Mirikharaji; Saeed Izadi; Jeremy Kawahara; Ghassan Hamarneh (ISBI, 2018)

Predicting Cancer with a Recurrent Visual Attention Model for Histopathology Images. - Aïcha BenTaieb; Ghassan Hamarneh (MICCAI (2), 2018)

Noninvasive Determination of Gene Mutations in Clear Cell Renal Cell Carcinoma Using Multiple Instance Decisions Aggregated CNN. - Mohammad Arafat Hussain; Ghassan Hamarneh; Rafeef Garbi (MICCAI (2), 2018)

Can Deep Learning Relax Endomicroscopy Hardware Miniaturization Requirements? - Saeed Izadi; Kathleen P. Moriarty; Ghassan Hamarneh (MICCAI (1), 2018)

Star Shape Prior in Fully Convolutional Networks for Skin Lesion Segmentation. - Zahra Mirikharaji; Ghassan Hamarneh (MICCAI (4), 2018)

Vulnerability Analysis of Chest X-Ray Image Classification Against Adversarial Attacks. - Saeid Asgari Taghanaki; Arkadeep Das; Ghassan Hamarneh (MLCN/DLF/iMIMIC@MICCAI, 2018)

Deep Learning Based Image Reconstruction for Diffuse Optical Tomography. - Hanene Ben Yedder; Aïcha BenTaieb; Majid Shokoufi; Amir Zahiremami; Farid Golnaraghi; Ghassan Hamarneh (MLMIR@MICCAI, 2018)

TreeNet: Multi-loss Deep Learning Network to Predict Branch Direction for Extracting 3D Anatomical Trees. - Mengliu Zhao; Ghassan Hamarneh (DLMIA/ML-CDS@MICCAI, 2018)

Automatic localization of normal active organs in 3D PET scans. - Saeedeh Afshari; Aïcha BenTaieb; Ghassan Hamarneh (Comput. Medical Imaging Graph., 2018)

Segmentation-free direct tumor volume and metabolic activity estimation from PET scans. - Saeid Asgari Taghanaki; Nóirín Duggan; Hillgan Ma; Xinchi Hou; Anna Celler; François Bénard; Ghassan Hamarneh (Comput. Medical Imaging Graph., 2018)

Select, Attend, and Transfer: Light, Learnable Skip Connections. - Saeid Asgari Taghanaki; Aïcha BenTaieb; Anmol Sharma; Shaohua Kevin Zhou; Yefeng Zheng 001; Bogdan Georgescu; Puneet Sharma; Sasa Grbic; Zhoubing Xu; Dorin Comaniciu; Ghassan Hamarneh (CoRR, 2018)

Segmentation and Measurement of Chronic Wounds for Bioprinting. - Peyman Gholami; Mohammad Ali Ahmadi-Pajouh; Nabiollah Abolftahi; Ghassan Hamarneh; Mohammad Kayvanrad (IEEE J. Biomed. Health Informatics, 2018)

Adversarial Stain Transfer for Histopathology Image Analysis. - Aïcha BenTaieb; Ghassan Hamarneh (IEEE Trans. Medical Imaging, 2018)

A Kernelized Manifold Mapping to Diminish the Effect of Adversarial Perturbations. - Saeid Asgari Taghanaki; Kumar Abhishek 001; Shekoofeh Azizi; Ghassan Hamarneh (CVPR, 2019)

WhiteNNer-Blind Image Denoising via Noise Whiteness Priors. - Saeed Izadi; Zahra Mirikharaji; Mengliu Zhao; Ghassan Hamarneh (ICCV Workshops, 2019)

Retinal Image Classification via Vasculature-Guided Sequential Attention. - Mengliu Zhao; Ghassan Hamarneh (ICCV Workshops, 2019)

Melanoma Recognition via Visual Attention. - Yiqi Yan; Jeremy Kawahara; Ghassan Hamarneh (IPMI, 2019)

Mask2Lesion: Mask-Constrained Adversarial Skin Lesion Image Synthesis. - Kumar Abhishek 001; Ghassan Hamarneh (SASHIMI@MICCAI, 2019)

ImHistNet: Learnable Image Histogram Based DNN with Application to Noninvasive Determination of Carcinoma Grades in CT Scans. - Mohammad Arafat Hussain; Ghassan Hamarneh; Rafeef Garbi (MICCAI (6), 2019)

Renal Cell Carcinoma Staging with Learnable Image Histogram-Based Deep Neural Network. - Mohammad Arafat Hussain; Ghassan Hamarneh; Rafeef Garbi (MLMI@MICCAI, 2019)

Image Super Resolution via Bilinear Pooling: Application to Confocal Endomicroscopy. - Saeed Izadi; Darren B. Sutton; Ghassan Hamarneh (MLMIR@MICCAI, 2019)

Learning to Segment Skin Lesions from Noisy Annotations. - Zahra Mirikharaji; Yiqi Yan; Ghassan Hamarneh (DART/MIL3ID@MICCAI, 2019)

Improved Inference via Deep Input Transfer. - Saeid Asgari Taghanaki; Kumar Abhishek 001; Ghassan Hamarneh (MICCAI (6), 2019)

Select, Attend, and Transfer: Light, Learnable Skip Connections. - Saeid Asgari Taghanaki; Aïcha BenTaieb; Anmol Sharma; Shaohua Kevin Zhou; Yefeng Zheng 001; Bogdan Georgescu; Puneet Sharma; Zhoubing Xu; Dorin Comaniciu; Ghassan Hamarneh (MLMI@MICCAI, 2019)

InfoMask: Masked Variational Latent Representation to Localize Chest Disease. - Saeid Asgari Taghanaki; Mohammad Havaei; Tess Berthier; Francis Dutil; Lisa Di-Jorio; Ghassan Hamarneh; Yoshua Bengio (MICCAI (6), 2019)

Limited-Angle Diffuse Optical Tomography Image Reconstruction Using Deep Learning. - Hanene Ben Yedder; Majid Shokoufi; Ben Cardoen; Farid Golnaraghi; Ghassan Hamarneh (MICCAI (1), 2019)

Generalizable Feature Learning in the Presence of Data Bias and Domain Class Imbalance with Application to Skin Lesion Classification. - Chris Yoon; Ghassan Hamarneh; Rafeef Garbi (MICCAI (4), 2019)

Tree-LSTM: Using LSTM to Encode Memory in Anatomical Tree Prediction from 3D Images. - Mengliu Zhao; Ghassan Hamarneh (MLMI@MICCAI, 2019)

Weakly supervised fully convolutional network for PET lesion segmentation. - Saeedeh Afshari; Aïcha BenTaieb; Zahra Mirikharaji; Ghassan Hamarneh (Image Processing, 2019)

Identification of caveolin-1 domain signatures via machine learning and graphlet analysis of single-molecule super-resolution data. - Ismail M. Khater; Fanrui Meng; Ivan Robert Nabi; Ghassan Hamarneh (Bioinform., 2019)

Predictive connectome subnetwork extraction with anatomical and connectivity priors. - Colin J. Brown; Steven P. Miller; Brian G. Booth; Jill G. Zwicker; Ruth E. Grunau; Anne R. Synnes; Vann Chau; Ghassan Hamarneh (Comput. Medical Imaging Graph., 2019)

Combo loss: Handling input and output imbalance in multi-organ segmentation. - Saeid Asgari Taghanaki; Yefeng Zheng 001; Shaohua Kevin Zhou; Bogdan Georgescu; Puneet Sharma; Daguang Xu; Dorin Comaniciu; Ghassan Hamarneh (Comput. Medical Imaging Graph., 2019)

Special issue on machine learning in medical imaging. - Li Wang 026; Yinghuan Shi; Heung-Il Suk; J. Alison Noble; Ghassan Hamarneh (Comput. Medical Imaging Graph., 2019)

Visual Diagnosis of Dermatological Disorders: Human and Machine Performance. - Jeremy Kawahara; Ghassan Hamarneh (CoRR, 2019)

Deep Learning Models for Digital Pathology. - Aïcha BenTaieb; Ghassan Hamarneh (CoRR, 2019)

Signed Input Regularization. - Saeid Asgari Taghanaki; Kumar Abhishek 001; Ghassan Hamarneh (CoRR, 2019)

Applying Artificial Intelligence to Glioma Imaging: Advances and Challenges. - Weina Jin; Mostafa Fatehi; Kumar Abhishek 001; Mayur Mallya; Brian Toyota; Ghassan Hamarneh (CoRR, 2019)

Computer-vision analysis reveals facial movements made during Mandarin tone production align with pitch trajectories. - Saurabh Garg 004; Ghassan Hamarneh; Allard Jongman; Joan A. Sereno; Yue Wang 065 (Speech Commun., 2019)

Seven-Point Checklist and Skin Lesion Classification Using Multitask Multimodal Neural Nets. - Jeremy Kawahara; Sara Daneshvar; Giuseppe Argenziano; Ghassan Hamarneh (IEEE J. Biomed. Health Informatics, 2019)

Fully Convolutional Neural Networks to Detect Clinical Dermoscopic Features. - Jeremy Kawahara; Ghassan Hamarneh (IEEE J. Biomed. Health Informatics, 2019)

Illumination-based Transformations Improve Skin Lesion Segmentation in Dermoscopic Images. - Kumar Abhishek 001; Ghassan Hamarneh; Mark S. Drew (CVPR Workshops, 2020)

Scanner Invariant Multiple Sclerosis Lesion Segmentation from MRI. - Shahab Aslani; Vittorio Murino; Michael Dayan; Roger C. Tam; Diego Sona; Ghassan Hamarneh (ISBI, 2020)

Patch-Based Non-local Bayesian Networks for Blind Confocal Microscopy Denoising. - Saeed Izadi; Ghassan Hamarneh (MICCAI (5), 2020)

A Review of Super-Resolution Single-Molecule Localization Microscopy Cluster Analysis and Quantification Methods. - Ismail M. Khater; Ivan Robert Nabi; Ghassan Hamarneh (Patterns, 2020)

ERGO: Efficient Recurrent Graph Optimized Emitter Density Estimation in Single Molecule Localization Microscopy. - Ben Cardoen; Hanene Ben Yedder; Anmol Sharma; Keng C. Chou; Ivan Robert Nabi; Ghassan Hamarneh (IEEE Trans. Medical Imaging, 2020)

Missing MRI Pulse Sequence Synthesis Using Multi-Modal Generative Adversarial Network. - Anmol Sharma; Ghassan Hamarneh (IEEE Trans. Medical Imaging, 2020)

AECNN: Adversarial and Enhanced Convolutional Neural Networks. - Saeed Izadi; Ghassan Hamarneh (Computer-Aided Analysis of Gastrointestinal Videos, 2021)

D-LEMA: Deep Learning Ensembles From Multiple Annotations - Application to Skin Lesion Segmentation. - Zahra Mirikharaji; Kumar Abhishek 001; Saeed Izadi; Ghassan Hamarneh (CVPR Workshops, 2021)

Matthews Correlation Coefficient Loss For Deep Convolutional Networks: Application To Skin Lesion Segmentation. - Kumar Abhishek 001; Ghassan Hamarneh (ISBI, 2021)

Culprit-Prune-Net: Efficient Continual Sequential Multi-domain Learning with Application to Skin Lesion Classification. - Nourhan Bayasi; Ghassan Hamarneh; Rafeef Garbi (MICCAI (7), 2021)

Deep semantic segmentation of natural and medical images: a review. - Saeid Asgari Taghanaki; Kumar Abhishek 001; Joseph Paul Cohen; Julien Cohen-Adad; Ghassan Hamarneh (Artif. Intell. Rev., 2021)

Deep learning for biomedical image reconstruction: a survey. - Hanene Ben Yedder; Ben Cardoen; Ghassan Hamarneh (Artif. Intell. Rev., 2021)

Learning-to-augment strategy using noisy and denoised data: Improving generalizability of deep CNN for the detection of COVID-19 in X-ray images. - Mohammad Momeny; Ali Asghar Neshat; Mohammad Arafat Hussain; Solmaz S. Kia; Mahmoud Marhamati; Ahmad Jahanbakhshi; Ghassan Hamarneh (Comput. Biol. Medicine, 2021)

Learnable image histograms-based deep radiomics for renal cell carcinoma grading and staging. - Mohammad Arafat Hussain; Ghassan Hamarneh; Rafeef Garbi (Comput. Medical Imaging Graph., 2021)

EUCA: A Practical Prototyping Framework towards End-User-Centered Explainable Artificial Intelligence. - Weina Jin; Jianyu Fan; Diane Gromala; Philippe Pasquier; Ghassan Hamarneh (CoRR, 2021)

Detection and Longitudinal Tracking of Pigmented Skin Lesions in 3D Total-Body Skin Textured Meshes. - Mengliu Zhao; Jeremy Kawahara; Sajjad Shamanian; Kumar Abhishek 001; Priyanka Chandrashekar; Ghassan Hamarneh (CoRR, 2021)

DEEMD: Drug Efficacy Estimation against SARS-CoV-2 based on cell Morphology with Deep multiple instance learning. - M. Sadegh Saberian; Kathleen P. Moriarty; Andrea D. Olmstead; Ivan Robert Nabi; François Jean; Maxwell W. Libbrecht; Ghassan Hamarneh (CoRR, 2021)

One Map Does Not Fit All: Evaluating Saliency Map Explanation on Multi-Modal Medical Images. - Weina Jin; Xiaoxiao Li; Ghassan Hamarneh (CoRR, 2021)

Cascaded Regression Neural Nets for Kidney Localization and Segmentation-free Volume Estimation. - Mohammad Arafat Hussain; Ghassan Hamarneh; Rafeef Garbi (IEEE Trans. Medical Imaging, 2021)

Evaluating Explainable AI on a Multi-Modal Medical Imaging Task: Can Existing Algorithms Fulfill Clinical Requirements? - Weina Jin; Xiaoxiao Li; Ghassan Hamarneh (AAAI, 2022)

BoosterNet: Improving Domain Generalization of Deep Neural Nets using Culpability-Ranked Features. - Nourhan Bayasi; Ghassan Hamarneh; Rafeef Garbi (CVPR, 2022)

FairDisCo: Fairer AI in Dermatology via Disentanglement Contrastive Learning. - Siyi Du; Ben Hers; Nourhan Bayasi; Ghassan Hamarneh; Rafeef Garbi (ECCV Workshops (4), 2022)

CIRCLe: Color Invariant Representation Learning for Unbiased Classification of Skin Lesions. - Arezou Pakzad; Kumar Abhishek 001; Ghassan Hamarneh (ECCV Workshops (4), 2022)

Deep Multimodal Guidance for Medical Image Classification. - Mayur Mallya; Ghassan Hamarneh (MICCAI (8), 2022)

MaskTune: Mitigating Spurious Correlations by Forcing to Explore. - Saeid Asgari Taghanaki; Aliasghar Khani; Fereshte Khani; Ali Gholami; Linh Tran; Ali Mahdavi-Amiri; Ghassan Hamarneh (NeurIPS, 2022)

Active deep learning from a noisy teacher for semi-supervised 3D image segmentation: Application to COVID-19 pneumonia infection in CT. - Mohammad Arafat Hussain; Zahra Mirikharaji; Mohammad Momeny; Mahmoud Marhamati; Ali Asghar Neshat; Rafeef Garbi; Ghassan Hamarneh (Comput. Medical Imaging Graph., 2022)

Testing the Ability of Convolutional Neural Networks to Learn Radiomic Features. - Ivan S. Klyuzhin; Yixi Xu; Anthony Ortiz; Juan Lavista Ferres; Ghassan Hamarneh; Arman Rahmim (Comput. Methods Programs Biomed., 2022)

Transcending XAI Algorithm Boundaries through End-User-Inspired Design. - Weina Jin; Jianyu Fan; Diane Gromala; Philippe Pasquier; Xiaoxiao Li; Ghassan Hamarneh (CoRR, 2022)

Skin3D: Detection and longitudinal tracking of pigmented skin lesions in 3D total-body textured meshes. - Mengliu Zhao; Jeremy Kawahara; Kumar Abhishek 001; Sajjad Shamanian; Ghassan Hamarneh (Medical Image Anal., 2022)

DEEMD: Drug Efficacy Estimation Against SARS-CoV-2 Based on Cell Morphology With Deep Multiple Instance Learning. - M. Sadegh Saberian; Kathleen P. Moriarty; Andrea D. Olmstead; Christian Hallgrimson; François Jean; Ivan Robert Nabi; Maxwell W. Libbrecht; Ghassan Hamarneh (IEEE Trans. Medical Imaging, 2022)

Multitask Deep Learning Reconstruction and Localization of Lesions in Limited Angle Diffuse Optical Tomography. - Hanene Ben Yedder; Ben Cardoen; Majid Shokoufi; Farid Golnaraghi; Ghassan Hamarneh (IEEE Trans. Medical Imaging, 2022)

Learning-to-Count by Learning-to-Rank. - Adriano C. D'Alessandro; Ali Mahdavi-Amiri; Ghassan Hamarneh (CRV, 2023)

Continual-GEN: Continual Group Ensembling for Domain-agnostic Skin Lesion Classification. - Nourhan Bayasi; Siyi Du; Ghassan Hamarneh; Rafeef Garbi (ISIC/Care-AI/MedAGI/DeCaF@MICCAI, 2023)

MDViT: Multi-domain Vision Transformer for Small Medical Image Segmentation Datasets. - Siyi Du; Nourhan Bayasi; Ghassan Hamarneh; Rafeef Garbi (MICCAI (4), 2023)

AViT: Adapting Vision Transformers for Small Skin Lesion Segmentation Datasets. - Siyi Du; Nourhan Bayasi; Ghassan Hamarneh; Rafeef Garbi (ISIC/Care-AI/MedAGI/DeCaF@MICCAI, 2023)

Image denoising in the deep learning era. - Saeed Izadi; Darren B. Sutton; Ghassan Hamarneh (Artif. Intell. Rev., 2023)

Invisible Users: Uncovering End-Users' Requirements for Explainable AI via Explanation Forms and Goals. - Weina Jin; Jianyu Fan; Diane Gromala; Philippe Pasquier; Ghassan Hamarneh (CoRR, 2023)

Rethinking AI Explainability and Plausibility. - Weina Jin; Xiaoxiao Li; Ghassan Hamarneh (CoRR, 2023)

AI-based analysis of super-resolution microscopy: Biological discovery in the absence of ground truth. - Ivan Robert Nabi; Ben Cardoen; Ismail M. Khater; Guang Gao; Timothy H. Wong; Ghassan Hamarneh (CoRR, 2023)

SYRAC: Synthesize, Rank, and Count. - Adriano C. D'Alessandro; Ali Mahdavi-Amiri; Ghassan Hamarneh (CoRR, 2023)

Mouth2Audio: intelligible audio synthesis from videos with distinctive vowel articulation. - Saurabh Garg 004; Haoyao Ruan; Ghassan Hamarneh; Dawn M. Behne; Allard Jongman; Joan A. Sereno; Yue Wang 065 (Int. J. Speech Technol., 2023)

Guidelines and evaluation of clinical explainable AI in medical image analysis. - Weina Jin; Xiaoxiao Li; Mostafa Fatehi; Ghassan Hamarneh (Medical Image Anal., 2023)

LogParadox. - Ben Cardoen; Hanene Ben Yedder; Sieun Lee; Ivan Robert Nabi; Ghassan Hamarneh (Zenodo, 2023)

Plain-to-clear speech video conversion for enhanced intelligibility. - Shubam Sachdeva; Haoyao Ruan; Ghassan Hamarneh; Dawn M. Behne; Allard Jongman; Joan A. Sereno; Yue Wang 065 (Int. J. Speech Technol., 2023)

Investigating the Quality of DermaMNIST and Fitzpatrick17k Dermatological Image Datasets. - Kumar Abhishek 001; Aditi Jain; Ghassan Hamarneh (Zenodo, 2023)

A survey on deep learning for skin lesion segmentation. - Zahra Mirikharaji; Kumar Abhishek 001; Alceu Bissoto; Catarina Barata; Sandra Avila; Eduardo Valle; M. Emre Celebi 001; Ghassan Hamarneh (Medical Image Anal., 2023)

Continual-Zoo: Leveraging Zoo Models for Continual Classification of Medical Images. - Nourhan Bayasi; Ghassan Hamarneh; Rafeef Garbi (CVPR Workshops, 2024)

AFreeCA: Annotation-Free Counting for All. - Adriano C. D'Alessandro; Ali Mahdavi-Amiri; Ghassan Hamarneh (ECCV (4), 2024)

SLiMe: Segment Like Me. - Aliasghar Khani; Saeid Asgari Taghanaki; Aditya Sanghi; Ali Mahdavi-Amiri; Ghassan Hamarneh (ICLR, 2024)

Lesion Elevation Prediction from Skin Images Improves Diagnosis. - Kumar Abhishek 001; Ghassan Hamarneh (ISIC/iMIMIC/EARTH/DeCaF@MICCAI, 2024)

Segmentation Style Discovery: Application to Skin Lesion Images. - Kumar Abhishek 001; Jeremy Kawahara; Ghassan Hamarneh (ISIC/iMIMIC/EARTH/DeCaF@MICCAI, 2024)

BiasPruner: Debiased Continual Learning for Medical Image Classification. - Nourhan Bayasi; Jamil Fayyad; Alceu Bissoto; Ghassan Hamarneh; Rafeef Garbi (MICCAI (10), 2024)

TrIND: Representing Anatomical Trees by Denoising Diffusion of Implicit Neural Fields. - Ashish Sinha; Ghassan Hamarneh (MICCAI (12), 2024)

Evaluating the clinical utility of artificial intelligence assistance and its explanation on the glioma grading task. - Weina Jin; Mostafa Fatehi; Ru Guo; Ghassan Hamarneh (Artif. Intell. Medicine, 2024)

Deep orthogonal multi-wavelength fusion for tomogram-free diagnosis in diffuse optical imaging. - Hanene Ben Yedder; Ben Cardoen; Majid Shokoufi; Farid Golnaraghi; Ghassan Hamarneh (Comput. Biol. Medicine, 2024)

Investigating the Quality of DermaMNIST and Fitzpatrick17k Dermatological Image Datasets. - Kumar Abhishek 001; Aditi Jain; Ghassan Hamarneh (CoRR, 2024)

Representing Anatomical Trees by Denoising Diffusion of Implicit Neural Fields. - Ashish Sinha; Ghassan Hamarneh (CoRR, 2024)

DermSynth3D: Synthesis of in-the-wild annotated dermatology images. - Ashish Sinha; Jeremy Kawahara; Arezou Pakzad; Kumar Abhishek 001; Matthieu Ruthven; Enjie Ghorbel; Anis Kacem 001; Djamila Aouada; Ghassan Hamarneh (Medical Image Anal., 2024)

Investigating the Quality of DermaMNIST and Fitzpatrick17k Dermatological Image Datasets. - Kumar Abhishek 001; Aditi Jain; Ghassan Hamarneh (Zenodo, 2024)

GC2: Generalizable Continual Classification of Medical Images. - Nourhan Bayasi; Ghassan Hamarneh; Rafeef Garbi (IEEE Trans. Medical Imaging, 2024)

Multi-sample ζ-mixup: richer, more realistic synthetic samples from a p-series interpolant. - Kumar Abhishek 001; Colin J. Brown; Ghassan Hamarneh (J. Big Data, 2024)

SMITE: Segment Me In TimE. - Amirhossein Alimohammadi; Sauradip Nag; Saeid Asgari Taghanaki; Andrea Tagliasacchi; Ghassan Hamarneh; Ali Mahdavi-Amiri (ICLR, 2025)

Disentangled PET Lesion Segmentation. - Tanya Gatsak; Kumar Abhishek 001; Hanene Ben Yedder; Saeid Asgari Taghanaki; Ghassan Hamarneh (ISBI, 2025)

Debiasify: Self-Distillation for Unsupervised Bias Mitigation. - Nourhan Bayasi; Jamil Fayyad; Ghassan Hamarneh; Rafeef Garbi; Homayoun Najjaran (WACV, 2025)

BiasPruner: Mitigating bias transfer in continual learning for fair medical image analysis. - Nourhan Bayasi; Jamil Fayyad; Alceu Bissoto; Ghassan Hamarneh; Rafeef Garbi (Medical Image Anal., 2025)

Closing the multichannel gap through computational reconstruction of interaction in super-resolution microscopy. - Ben Cardoen; Hanene Ben Yedder; Ivan Robert Nabi; Ghassan Hamarneh (Patterns, 2025)

SuperResNET: Model-Free Single-Molecule Network Analysis Software Achieves Molecular Resolution of Nup96. - Yahongyang Lydia Li; Ismail M. Khater; Christian Hallgrimson; Ben Cardoen; Timothy H. Wong; Ghassan Hamarneh; Ivan Robert Nabi (Adv. Intell. Syst., 2025)

AI for Just Work: Constructing Diverse Imaginations of AI beyond "Replacing Humans". - Weina Jin; Nicholas Vincent; Ghassan Hamarneh (CoRR, 2025)

Learning What NOT to Count. - Adriano C. D'Alessandro; Ali Mahdavi-Amiri; Ghassan Hamarneh (CoRR, 2025)

Ethical Medical Image Synthesis. - Weina Jin; Ashish Sinha; Kumar Abhishek 001; Ghassan Hamarneh (CoRR, 2025)

What Can We Learn from Inter-Annotator Variability in Skin Lesion Segmentation? - Kumar Abhishek 001; Jeremy Kawahara; Ghassan Hamarneh (CoRR, 2025)