PyMod 2.0: improvements in protein sequence-structure analysis and homology modeling within PyMOL. - Giacomo Janson; Chengxin Zhang; Maria Giulia Prado; Alessandro Paiardini (Bioinform., 2017)

Revisiting the "satisfaction of spatial restraints" approach of MODELLER for protein homology modeling. - Giacomo Janson; Alessandro Grottesi; Marco Pietrosanto; Gabriele Ausiello; Giulia Guarguaglini; Alessandro Paiardini (PLoS Comput. Biol., 2019)

PyMod 3: a complete suite for structural bioinformatics in PyMOL. - Giacomo Janson; Alessandro Paiardini (Bioinform., 2021)

Transferable deep generative modeling of intrinsically disordered protein conformations. - Giacomo Janson; Michael Feig (PLoS Comput. Biol., 2024)