Hierarchical Classification of Enzyme Promiscuity Using Positive, Unlabeled, and Hard Negative Examples. - Gian Marco Visani; Michael C. Hughes; Soha Hassoun (CoRR, 2020)

Approximate Bayesian Computation for an Explicit-Duration Hidden Markov Model of COVID-19 Hospital Trajectories. - Gian Marco Visani; Alexandra Hope Lee; Cuong Nguyen; David M. Kent; John B. Wong; Joshua T. Cohen; Michael C. Hughes (MLHC, 2021)

Holographic-(V)AE: an end-to-end SO(3)-Equivariant (Variational) Autoencoder in Fourier Space. - Gian Marco Visani; Michael N. Pun; Armita Nourmohammad (CoRR, 2022)

H-Packer: Holographic Rotationally Equivariant Convolutional Neural Network for Protein Side-Chain Packing. - Gian Marco Visani; William Galvin; Michael N. Pun; Armita Nourmohammad (MLCB, 2023)

HERMES: Holographic Equivariant neuRal network model for Mutational Effect and Stability prediction. - Gian Marco Visani; Michael N. Pun; William Galvin; Eric Daniel; Kevin Borisiak; Utheri Wagura; Armita Nourmohammad (CoRR, 2024)

Loop-Diffusion: an equivariant diffusion model for designing and scoring protein loops. - Kevin Borisiak; Gian Marco Visani; Armita Nourmohammad (CoRR, 2024)

T-cell receptor specificity landscape revealed through de novo peptide design. - Gian Marco Visani; Michael N. Pun; Anastasia A. Minervina; Philip Bradley; Paul Thomas; Armita Nourmohammad (CoRR, 2025)