Some Recursive Unsolvable Problems Relating to Isolated Cutpoints in Probabilistic Automata. - Alberto Bertoni; Giancarlo Mauri; Mauro Torelli (ICALP, 1977)

An Algebraic Approach to Problem Solution and Problem Semantics. - Alberto Bertoni; Giancarlo Mauri; Mauro Torelli (MFCS, 1977)

Extending the Entity-Relationship Approach to Take in Account Historical Aspects of Systems. - Valeria De Antonellis; G. Degli Antoni; Giancarlo Mauri; Bruna Zonta (ER, 1979)

A Characterization of Abstract Data as Model-Theoretic Invariants. - Alberto Bertoni; Giancarlo Mauri; Pierangelo Miglioli (ICALP, 1979)

Three Efficient Algorithms for Counting Problems. - Alberto Bertoni; Giancarlo Mauri; Mauro Torelli (Inf. Process. Lett., 1979)

Use of bipartite graphs as a notation for data bases. - Valeria De Antonellis; Fiorella de Cindio; G. Degli Antoni; Giancarlo Mauri (Inf. Syst., 1979)

Towards a Theory of Abstract Data Types: A Discussion on Problems and Tools. - Alberto Bertoni; Giancarlo Mauri; Pierangelo Miglioli (Symposium on Programming, 1980)

On the Logic of Concurrency and Conflict. - Giancarlo Mauri; Marco Brambilla (Selected Papers from the First and the Second European Workshop on Application and Theory of Petri Nets, 1981)

A # P-Complete Problem over Arithmetical Trees. - Giancarlo Mauri; Nicoletta Sabadini (CAAP, 1981)

An Application of the Theory of Free Partially Commutative Monoids: Asymptotic Densities of Trace Languages. - Alberto Bertoni; Marco Brambilla; Giancarlo Mauri; Nicoletta Sabadini (MFCS, 1981)

A Characterization of the Class of Functions Computable in Polynomial Time on Random Access Machines - Alberto Bertoni; Giancarlo Mauri; Nicoletta Sabadini (STOC, 1981)

On Efficient Computation of the Coefficients of Some Polynomials with Applications to Some Enumeration Problems. - Alberto Bertoni; Giancarlo Mauri (Inf. Process. Lett., 1981)

Equivalence and Membership Problems for Regular Trace Languages. - Alberto Bertoni; Giancarlo Mauri; Nicoletta Sabadini (ICALP, 1982)

Abstract Data Types and Their Extensions within a Constructive Logic. - Alberto Bertoni; Giancarlo Mauri; Pierangelo Miglioli; Mario Ornaghi (Semantics of Data Types, 1984)

A Formal Basis for Performance Evaluation of Natural Language Understanding Systems. - Giovanni Guida; Giancarlo Mauri (Comput. Linguistics, 1984)

A Symbolic Manipulation System for Combinatorial Problems. - Paolo Massazza; Giancarlo Mauri; P. Righi; Mauro Torelli (AAECC, 1986)

OBJ-SAN: Towards the Definition of a Class of High-Level Nets using OBJ2. - Giancarlo Mauri (ADT, 1986)

Parallel Algorithms and the Classification of Problems. - Alberto Bertoni; Massimiliano Goldwurm; Giancarlo Mauri; Nicoletta Sabadini (WOPPLOT, 1986)

Evaluation of natural language processing systems: Issues and approaches. - Giovanni Guida; Giancarlo Mauri (Proc. IEEE, 1986)

OBJSA Nets: a Class of High- level Nets Having Objects as Domains. - Eugenio Battiston; Fiorella de Cindio; Giancarlo Mauri (European Workshop on Applications and Theory of Petri Nets, 1987)

UNIX-Tutor: An Experiment for the Use of Deep Knowledge for Tutoring. - Gisella Arienti; Tiziana Cazzaniga; Francesco Gardin; Giancarlo Mauri (IFIP Congress, 1989)

Flowshop and Travelling Salesman Problem. - Maria Pia Pensini; Giancarlo Mauri; Francesco Gardin (Parallelism, Learning, Evolution, 1989)

Membership Problems for Regular and Context-Free Trace Languages - Alberto Bertoni; Giancarlo Mauri; Nicoletta Sabadini (Inf. Comput., 1989)

Some Notes on Computational Learing Theory. - Alberto Bertoni; Paola Campadelli; Giancarlo Mauri (Bull. EATCS, 1991)

Recognizing sets of labelled acyclic graphs. - Paola Bonizzoni; Giancarlo Mauri; Giovanni Pighizzini; Nicoletta Sabadini (Tree Automata and Languages, 1992)

Combining Image Processing Operators and Neural Networks in A Face Recognition System. - Paola Flocchini; Francesco Gardin; Giancarlo Mauri; Maria Pia Pensini; Paolo Stofella (Int. J. Pattern Recognit. Artif. Intell., 1992)

On Automata on Infinite Trees. - Paola Bonizzoni; Giancarlo Mauri (Theor. Comput. Sci., 1992)

Semantics Frameworks for a Class of Modular Algebraic Nets. - Eugenio Battiston; V. Crespi; Fiorella de Cindio; Giancarlo Mauri (AMAST, 1993)

Complex Chaotic Behavior of a Class of Subshift Cellular Automata. - G. Braga; Gianpiero Cattaneo; Paola Flocchini; Giancarlo Mauri (Complex Syst., 1993)

Evaluating Performance and Quality of Knowledge-Based Systems: Foundation and Methodology. - Giovanni Guida; Giancarlo Mauri (IEEE Trans. Knowl. Data Eng., 1993)

Identifying Regular Languages over Partially-Commutative Monoids. - Claudio Ferretti; Giancarlo Mauri (AII/ALT, 1994)

Identifying Unrecognizable Regular Languages by Queries. - Claudio Ferretti; Giancarlo Mauri (ECML, 1994)

Counting Techniques for Inclusion, Equivalence and Membership Problems. - Alberto Bertoni; Massimiliano Goldwurm; Giancarlo Mauri; Nicoletta Sabadini (The Book of Traces, 1995)

Rule Space Transformations and One-Dimensional Cellular Automata. - Gianpiero Cattaneo; Enrico Formenti; Giancarlo Mauri (Developments in Language Theory, 1995)

Towards Multilayered Automata Networks. - Stefania Bandini; Giancarlo Mauri (ACRI, 1996)

Essential Transformations of the One Dimensional Cellular Automata Rule Space and Endomorphisms of Compact Abelian Groups. - Gianpiero Cattaneo; Enrico Formenti; Giancarlo Mauri; A. Vaccaro; Luciano Margara (ACRI, 1996)

Modular Algebraic Nets to Specify Concurrent Systems. - Eugenio Battiston; Fiorella de Cindio; Giancarlo Mauri (IEEE Trans. Software Eng., 1996)

Application of Evolutionary Algorithms to Protein Folding Prediction. - Antonio Piccolboni; Giancarlo Mauri (Artificial Evolution, 1997)

On Controlling Rewriting by Properties of Strings and Symbols. - Paolo Bottoni; Giancarlo Mauri; Piero Mussio (New Trends in Formal Languages, 1997)

A Reduced Distributed Splicing System for RE Languages. - Claudio Zandron; Claudio Ferretti; Giancarlo Mauri (New Trends in Formal Languages, 1997)

Transformations of the One-Dimensional Cellular Automata Rule Space. - Gianpiero Cattaneo; Enrico Formenti; Luciano Margara; Giancarlo Mauri (Parallel Comput., 1997)

Fragment assembly system for DNA sequencing projects. - Luciano Milanesi; M. Marsilli; Giancarlo Mauri; C. Rolfi; L. Uboldi (Mathematical Support for Molecular Biology, 1998)

Nine Test Tubes Generate any RE Language. - Claudio Ferretti; Giancarlo Mauri; Claudio Zandron (MCU (2), 1998)

Distance space evolutionary algorithms for protein folding prediction. - Antonio Piccolboni; Giancarlo Mauri (SMC, 1998)

Grammars Working on Layered Strings. - Paolo Bottoni; Giancarlo Mauri; Piero Mussio; Gheorghe Paun (Acta Cybern., 1998)

Coordination through Group Rewriting. - Paolo Bottoni; Giancarlo Mauri; Piero Mussio (Grammatical Models of Multi-Agent Systems, 1999)

Implementing Cellular Automata Based Models on Parallel Architectures: The CAPP Project. - Stefania Bandini; Giovanni Erbacci; Giancarlo Mauri (PaCT, 1999)

A Parallel Model Based on Cellular Automata for the Simulation of Pesticide Percolation in the Soil. - Stefania Bandini; Giancarlo Mauri; Giulio Pavesi; Carla Simone (PaCT, 1999)

Approximation Algorithms for Protein Folding Prediction. - Giancarlo Mauri; Giulio Pavesi; Antonio Piccolboni (SODA, 1999)

Multilayered Cellular Automata. - Stefania Bandini; Giancarlo Mauri (Theor. Comput. Sci., 1999)

On the Dynamical Behavior of Chaotic Cellular Automata. - Gianpiero Cattaneo; Enrico Formenti; Luciano Margara; Giancarlo Mauri (Theor. Comput. Sci., 1999)

Learning fuzzy rules with tabu search-an application to control. - Maurizio Denna; Giancarlo Mauri; Anna Maria Zanaboni (IEEE Trans. Fuzzy Syst., 1999)

A Duality in Two Connectivity-Preserving Parallel Shrinking Algorithms for Binary Images. - Hiroshi Umeo; Giancarlo Mauri (ACRI, 2000)

Bidimensional Contextual Grammars. - Paolo Bottoni; Giancarlo Mauri; Piero Mussio (Recent Topics in Mathematical and Computational Linguistics, 2000)

DNA and Circular Splicing. - Paola Bonizzoni; Clelia de Felice; Giancarlo Mauri; Rosalba Zizza (DNA Computing, 2000)

Approximation Algorithms for String Folding Problems. - Giancarlo Mauri; Giulio Pavesi (IFIP TCS, 2000)

Solving NP-Complete Problems Using P Systems with Active Membranes. - Claudio Zandron; Claudio Ferretti; Giancarlo Mauri (UMC, 2000)

Approximating the Maximum Isomorphic Agreement Subtree is Hard. - Paola Bonizzoni; Gianluca Della Vedova; Giancarlo Mauri (Int. J. Found. Comput. Sci., 2000)

On the Power of Pictorial Languages. - Paolo Bottoni; Giancarlo Mauri; Piero Mussio; Gheorghe Paun (Int. J. Pattern Recognit. Artif. Intell., 2000)

On the universality of Post and splicing systems. - Claudio Ferretti; Giancarlo Mauri; Satoshi Kobayashi; Takashi Yokomori (Theor. Comput. Sci., 2000)

Nine test tubes generate any RE language. - Claudio Ferretti; Giancarlo Mauri; Claudio Zandron (Theor. Comput. Sci., 2000)

Splicing systems using merge and separate operations. - Claudio Zandron; Giancarlo Mauri; Claudio Ferretti; Paola Bonizzoni (Where Mathematics, Computer Science, Linguistics and Biology Meet, 2001)

P Systems with Gemmation of Mobile Membranes. - Daniela Besozzi; Claudio Zandron; Giancarlo Mauri; Nicoletta Sabadini (ICTCS, 2001)

An algorithm for finding signals of unknown length in DNA sequences. - Giulio Pavesi; Giancarlo Mauri; Graziano Pesole (ISMB (Supplement of Bioinformatics), 2001)

Two Normal Forms for Rewriting P Systems. - Claudio Zandron; Claudio Ferretti; Giancarlo Mauri (MCU, 2001)

Parallel Generation of Percolation Beds Based on Stochastic Cellular Automata. - Stefania Bandini; Giancarlo Mauri; Giulio Pavesi (PaCT, 2001)

Parallel Algorithms for the Analysis of Biological Sequences. - Giancarlo Mauri; Giulio Pavesi (PaCT, 2001)

An approximation algorithm for the shortest common supersequence problem: an experimental analysis. - Paolo Barone; Paola Bonizzoni; Gianluca Della Vedova; Giancarlo Mauri (SAC, 2001)

Methods for Pattern Discovery in Unaligned Biological Sequences. - Giulio Pavesi; Giancarlo Mauri; Graziano Pesole (Briefings Bioinform., 2001)

Experimenting an approximation algorithm for the LCS. - Paola Bonizzoni; Gianluca Della Vedova; Giancarlo Mauri (Discret. Appl. Math., 2001)

Parallel simulation of reaction-diffusion phenomena in percolation processes : A model based on cellular automata. - Stefania Bandini; Giancarlo Mauri; Giulio Pavesi; Carla Simone (Future Gener. Comput. Syst., 2001)

Separating some splicing models. - Paola Bonizzoni; Claudio Ferretti; Giancarlo Mauri; Rosalba Zizza (Inf. Process. Lett., 2001)

Cellular automata: From modeling to applications. - Stefania Bandini; Giancarlo Mauri; Roberto Serra (Parallel Comput., 2001)

Cellular automata: From a theoretical parallel computational model to its application to complex systems. - Stefania Bandini; Giancarlo Mauri; Roberto Serra (Parallel Comput., 2001)

Computing with Shapes. - Paolo Bottoni; Giancarlo Mauri; Piero Mussio; Gheorghe Paun (J. Vis. Lang. Comput., 2001)

Decision Problems for Linear and Circular Splicing Systems. - Paola Bonizzoni; Clelia de Felice; Giancarlo Mauri; Rosalba Zizza (Developments in Language Theory, 2002)

Parallel Rewriting P Systems with Deadlock. - Daniela Besozzi; Claudio Ferretti; Giancarlo Mauri; Claudio Zandron (DNA, 2002)

Parallel Rewriting P Systems without Target Conflicts. - Daniela Besozzi; Giancarlo Mauri; Claudio Zandron (WMC-CdeA, 2002)

A parallel algorithm for pattern discovery in biological sequences. - Giancarlo Mauri; Giulio Pavesi (Future Gener. Comput. Syst., 2002)

A duality theorem for two connectivity-preserving parallel shrinking transformations. - Hiroshi Umeo; Giancarlo Mauri (Future Gener. Comput. Syst., 2002)

Using genetic algorithms for spectral-based printer characterization. - Silvia Zuffi; Raimondo Schettini; Giancarlo Mauri (Color Imaging: Processing, Hardcopy, and Applications, 2003)

Pattern Discovery in RNA Secondary Structure Using Affix Trees. - Giancarlo Mauri; Giulio Pavesi (CPM, 2003)

Regular Languages Generated by Reflexive Finite Splicing Systems. - Paola Bonizzoni; Clelia de Felice; Giancarlo Mauri; Rosalba Zizza (Developments in Language Theory, 2003)

Deadlock Decidability in Partial Parallel P Systems. - Daniela Besozzi; Giancarlo Mauri; Claudio Zandron (DNA, 2003)

Word Design for Molecular Computing: A Survey. - Giancarlo Mauri; Claudio Ferretti (DNA, 2003)

Predicting Conserved Hairpin Motifs in Unaligned RNA Sequences. - Giulio Pavesi; Giancarlo Mauri; Graziano Pesole (ICTAI, 2003)

Collapsing Hierarchies of Parallel Rewriting P Systems without Target Conflicts. - Daniela Besozzi; Giancarlo Mauri; György Vaszil; Claudio Zandron (Workshop on Membrane Computing, 2003)

On the Computational Complexity of Conservative Computing. - Giancarlo Mauri; Alberto Leporati (MFCS, 2003)

Spectral-Based Characterization of Inkjet Printers by Neural and Genetic Algorithms. - Silvia Zuffi; Raimondo Schettini; Giancarlo Mauri (PICS, 2003)

A Probabilistic Neural Networks System to Recognize 3D Face of People. - Giancarlo Mauri; Italo Zoppis (WIRN, 2003)

Gemmating P systems: collapsing hierarchies. - Daniela Besozzi; Giancarlo Mauri; Gheorghe Paun; Claudio Zandron (Theor. Comput. Sci., 2003)

On three variants of rewriting P systems. - Claudio Ferretti; Giancarlo Mauri; Gheorghe Paun; Claudio Zandron (Theor. Comput. Sci., 2003)

Remarks on Relativisations and DNA Encodings. - Claudio Ferretti; Giancarlo Mauri (Aspects of Molecular Computing, 2004)

An Empirical Approach for Spectral Color Printers Characterization. - Raimondo Schettini; Daniela Bianucci; Giancarlo Mauri; Silvia Zuffi (CGIV, 2004)

An Explicit Upper Bound for the Approximation Ratio of the Maximum Gene Regulatory Network Problem. - Sergio Pozzi; Gianluca Della Vedova; Giancarlo Mauri (CMSB, 2004)

A GA Approach to the Definition of Regulatory Signals in Genomic Sequences. - Giancarlo Mauri; Roberto Mosca 002; Giulio Pavesi (GECCO (1), 2004)

Computing with a Distributed Reaction-Diffusion Model. - Stefania Bandini; Giancarlo Mauri; Giulio Pavesi; Carla Simone (MCU, 2004)

Universal Families of Reversible P Systems. - Alberto Leporati; Claudio Zandron; Giancarlo Mauri (MCU, 2004)

Conservative Computations in Energy-Based P Systems. - Alberto Leporati; Claudio Zandron; Giancarlo Mauri (Workshop on Membrane Computing, 2004)

Combinatorial and Machine Learning Approaches in Clustering Microarray Data. - Sergio Pozzi; Italo Zoppis; Giancarlo Mauri (WIRN, 2004)

In silico representation and discovery of transcription factor binding sites. - Giulio Pavesi; Giancarlo Mauri; Graziano Pesole (Briefings Bioinform., 2004)

Circular splicing and regularity. - Paola Bonizzoni; Clelia de Felice; Giancarlo Mauri; Rosalba Zizza (RAIRO Theor. Informatics Appl., 2004)

An Algorithm for Finding Conserved Secondary Structure Motifs in Unaligned RNA Sequences. - Giulio Pavesi; Giancarlo Mauri; Graziano Pesole (J. Comput. Sci. Technol., 2004)

Simulating the Fredkin Gate with Energy-Based P Systems. - Alberto Leporati; Claudio Zandron; Giancarlo Mauri (J. Univers. Comput. Sci., 2004)

Weeder Web: discovery of transcription factor binding sites in a set of sequences from co-regulated genes. - Giulio Pavesi; Paolo Mereghetti; Giancarlo Mauri; Graziano Pesole (Nucleic Acids Res., 2004)

Hierarchies of Parallel Rewriting P Systems - A Survey. - Daniela Besozzi; Giancarlo Mauri; Claudio Zandron (New Gener. Comput., 2004)

Recombinant DNA , Gene Splicing as Generative Devices of Formal Languages. - Paola Bonizzoni; Clelia de Felice; Giancarlo Mauri (CiE, 2005)

Analysis and Simulation of Dynamics in Probabilistic P Systems. - Dario Pescini; Daniela Besozzi; Claudio Zandron; Giancarlo Mauri (DNA, 2005)

Bio Molecular Engine: a bio-inspired environment for models of growing and evolvable computation. - Alberto Gallini; Claudio Ferretti; Giancarlo Mauri (GECCO Workshops, 2005)

A Membrane Computing System Mapped on an Asynchronous, Distributed Computational Environment. - Guido Casiraghi; Claudio Ferretti; Alberto Gallini; Giancarlo Mauri (Workshop on Membrane Computing, 2005)

P Systems with Memory. - Paolo Cazzaniga; Alberto Leporati; Giancarlo Mauri; Claudio Zandron (Workshop on Membrane Computing, 2005)

Quantum Sequential P Systems with Unit Rules and Energy Assigned to Membranes. - Alberto Leporati; Giancarlo Mauri; Claudio Zandron (Workshop on Membrane Computing, 2005)

Bio-Molecular Engine: A Simulation Environment for Bio-Inspired Architectural Models of Molecular-Scale Devices Based Machines. - Alberto Gallini; Claudio Ferretti; Giancarlo Mauri; Davide Molteni (MSV, 2005)

Investigating Local Evolutions in Dynamical Probabilistic P Systems. - Dario Pescini; Daniela Besozzi; Giancarlo Mauri (SYNASC, 2005)

Clustering Causal Relationships in Genes Expression Data. - Sergio Pozzi; Italo Zoppis; Giancarlo Mauri (WIRN/NAIS, 2005)

Overview of BITS2005, the Second Annual Meeting of the Italian Bioinformatics Society. - Manuela Helmer-Citterich; Rita Casadio; Alessandro Guffanti; Giancarlo Mauri; Luciano Milanesi; Graziano Pesole; Giorgio Valle; Cecilia Saccone (BMC Bioinform., 2005)

On the power of circular splicing. - Paola Bonizzoni; Clelia de Felice; Giancarlo Mauri; Rosalba Zizza (Discret. Appl. Math., 2005)

On-line construction of compact directed acyclic word graphs. - Shunsuke Inenaga; Hiromasa Hoshino; Ayumi Shinohara; Masayuki Takeda; Setsuo Arikawa; Giancarlo Mauri; Giulio Pavesi (Discret. Appl. Math., 2005)

Spectral-based printer modeling and characterization. - Silvia Zuffi; Raimondo Schettini; Giancarlo Mauri (J. Electronic Imaging, 2005)

On the power and size of extended gemmating P systems. - Daniela Besozzi; Erzsébet Csuhaj-Varjú; Giancarlo Mauri; Claudio Zandron (Soft Comput., 2005)

Regular splicing languages and subclasses. - Paola Bonizzoni; Giancarlo Mauri (Theor. Comput. Sci., 2005)

Algorithms for pattern matching and discovery in RNA secondary structure. - Giancarlo Mauri; Giulio Pavesi (Theor. Comput. Sci., 2005)

A Decision Procedure for Reflexive Regular Splicing Languages. - Paola Bonizzoni; Giancarlo Mauri (Developments in Language Theory, 2006)

Using Subtree Crossover Distance to Investigate Genetic Programming Dynamics. - Leonardo Vanneschi; Steven M. Gustafson; Giancarlo Mauri (EuroGP, 2006)

Heterogeneous cooperative coevolution: strategies of integration between GP and GA. - Leonardo Vanneschi; Giancarlo Mauri; Andrea Valsecchi; Stefano Cagnoni (GECCO, 2006)

Tau Leaping Stochastic Simulation Method in P Systems. - Paolo Cazzaniga; Dario Pescini; Daniela Besozzi; Giancarlo Mauri (Workshop on Membrane Computing, 2006)

P System Models for Mechanosensitive Channels. - Ioan I. Ardelean; Daniela Besozzi; Max H. Garzon; Giancarlo Mauri; Sujoy Roy (Applications of Membrane Computing, 2006)

Linear splicing and syntactic monoid. - Paola Bonizzoni; Clelia de Felice; Giancarlo Mauri; Rosalba Zizza (Discret. Appl. Math., 2006)

Communication via Mobile Vesicles in Brane Calculi. - Antonio Vitale; Giancarlo Mauri (MeCBIC@ICALP, 2006)

Supporting Action-at-a-distance in Situated Cellular Agents. - Stefania Bandini; Giancarlo Mauri; Giuseppe Vizzari (Fundam. Informaticae, 2006)

Reversible P Systems to Simulate Fredkin Circuits. - Alberto Leporati; Claudio Zandron; Giancarlo Mauri (Fundam. Informaticae, 2006)

Dynamical probabilistic P systems. - Dario Pescini; Daniela Besozzi; Giancarlo Mauri; Claudio Zandron (Int. J. Found. Comput. Sci., 2006)

Complexity classes for membrane systems. - Antonio E. Porreca; Giancarlo Mauri; Claudio Zandron (RAIRO Theor. Informatics Appl., 2006)

Network integration of data and analysis of oncology interest. - Paolo Romano 001; Guglielmo Bertolini; Flavio De Paoli; M. Fattore; Domenico Marra; Giancarlo Mauri; Emanuela Merelli; Ivan Porro; Silvia Scaglione; Luciano Milanesi (J. Integr. Bioinform., 2006)

MoD Tools: regulatory motif discovery in nucleotide sequences from co-regulated or homologous genes. - Giulio Pavesi; Paolo Mereghetti; Federico Zambelli; Marco Stefani; Giancarlo Mauri; Graziano Pesole (Nucleic Acids Res., 2006)

Membrane Systems and Their Application to Systems Biology. - Giancarlo Mauri (CiE, 2007)

Ontological Modelling for Neurovascular Disease Study: Issues in the Adoption of Description Logic. - Gianluca Colombo; Daniele Merico; Marco Antoniotti; Flavio De Paoli; Giancarlo Mauri (Description Logics, 2007)

A Comprehensive View of Fitness Landscapes with Neutrality and Fitness Clouds. - Leonardo Vanneschi; Marco Tomassini; Philippe Collard; Sébastien Vérel; Yuri Pirola; Giancarlo Mauri (EuroGP, 2007)

Support Vector Clustering of Dependencies in Microarray Data. - Italo Zoppis; Sergio Pozzi; Giancarlo Mauri (IMECS, 2007)

Discovering Relations Among GO-Annotated Clusters by Graph Kernel Methods. - Italo Zoppis; Daniele Merico; Marco Antoniotti; Bud Mishra; Giancarlo Mauri (ISBRA, 2007)

On a Paun's Conjecture in Membrane Systems. - Giancarlo Mauri; Mario J. Pérez-Jiménez; Claudio Zandron (IWINAC (1), 2007)

Evaluating Graph Kernel Methods for Relation Discovery in GO-Annotated Clusters. - Daniele Merico; Italo Zoppis; Marco Antoniotti; Giancarlo Mauri (KES (3), 2007)

Solving Numerical NP-Complete Problems with Spiking Neural P Systems. - Alberto Leporati; Claudio Zandron; Claudio Ferretti; Giancarlo Mauri (Workshop on Membrane Computing, 2007)

Reference Ontology Design for a Neurovascular Knowledge Network. - Gianluca Colombo; Daniele Merico; Giancarlo Mauri (MTSR, 2007)

Biowep: a workflow enactment portal for bioinformatics applications. - Paolo Romano 001; Ezio Bartocci; Guglielmo Bertolini; Flavio De Paoli; Domenico Marra; Giancarlo Mauri; Emanuela Merelli; Luciano Milanesi (BMC Bioinform., 2007)

The Genopolis Microarray Database. - Andrea Splendiani; Marco Brandizi; Gael Even; Ottavio Beretta; Norman Pavelka; Mattia Pelizzola; Manuel Mayhaus; Maria Foti; Giancarlo Mauri; Paola Ricciardi-Castagnoli (BMC Bioinform., 2007)

Emergent Pattern Interpretation in Vegetable Population Dynamics. - Stefania Bandini; Sara Manzoni; Giancarlo Mauri; Stefano Redaelli (J. Cell. Autom., 2007)

GP Generation of Pedestrian Behavioral Rules in an Evacuation Model Based on SCA. - Stefania Bandini; Sara Manzoni; Giancarlo Mauri; Stefano Redaelli; Leonardo Vanneschi (ACRI, 2008)

How Redundant Is Your Universal Computation Device?. - Alberto Leporati; Claudio Zandron; Giancarlo Mauri (Workshop on Membrane Computing, 2008)

First Steps Towards a Wet Implementation for t-DPP. - Dario Pescini; Paolo Cazzaniga; Claudio Ferretti; Giancarlo Mauri (Workshop on Membrane Computing, 2008)

Modelling metapopulations with stochastic membrane systems. - Daniela Besozzi; Paolo Cazzaniga; Dario Pescini; Giancarlo Mauri (Biosyst., 2008)

Simulation of a bounded symport/antiport P system with Brane calculi. - Antonio Vitale; Giancarlo Mauri; Claudio Zandron (Biosyst., 2008)

Frequency Membrane Systems. - Davide Molteni; Claudio Ferretti; Giancarlo Mauri (Comput. Informatics, 2008)

On the Computational Efficiency of Polarizationless Recognizer P Systems with Strong Division and Dissolution. - Claudio Zandron; Alberto Leporati; Claudio Ferretti; Giancarlo Mauri; Mario J. Pérez-Jiménez (Fundam. Informaticae, 2008)

A Mutual Information Approach to Data Integration for Alzheimer's Disease Patients. - Italo Zoppis; Erica Gianazza; Clizia Chinello; Veronica Mainini; Carmen Galbusera; Carlo Ferrarese; Gloria Galimberti; Alessandro Sorbi; Barbara Borroni; Fulvio Magni; Giancarlo Mauri (AIME, 2009)

A Multi-volume Approach to Stochastic Modeling with Membrane Systems. - Daniela Besozzi; Paolo Cazzaniga; Dario Pescini; Giancarlo Mauri (Algorithmic Bioprocesses, 2009)

A Comparison of Genetic Algorithms and Particle Swarm Optimization for Parameter Estimation in Stochastic Biochemical Systems. - Daniela Besozzi; Paolo Cazzaniga; Giancarlo Mauri; Dario Pescini; Leonardo Vanneschi (EvoBIO, 2009)

A Novel Variant of P Systems for the Modelling and Simulation of Biochemical Systems. - Paolo Cazzaniga; Giancarlo Mauri; Luciano Milanesi; Ettore Mosca; Dario Pescini (Workshop on Membrane Computing, 2009)

Energy-Based Models of P Systems. - Giancarlo Mauri; Alberto Leporati; Claudio Zandron (Workshop on Membrane Computing, 2009)

An Efficient Simulation of Polynomial-Space Turing Machines by P Systems with Active Membranes. - Andrea Valsecchi; Antonio E. Porreca; Alberto Leporati; Giancarlo Mauri; Claudio Zandron (Workshop on Membrane Computing, 2009)

A study on the combined interplay between stochastic fluctuations and the number of flagella in bacterial chemotaxis - Daniela Besozzi; Paolo Cazzaniga; Matteo Dugo; Dario Pescini; Giancarlo Mauri (COMPMOD, 2009)

Special Issue on Membrane Computing, Seventh Brainstorming Week on Membrane Computing. - Giancarlo Mauri; Gheorghe Paun; Agustín Riscos-Núñez (Int. J. Comput. Commun. Control, 2009)

Introducing a Space Complexity Measure for P Systems. - Antonio E. Porreca; Alberto Leporati; Giancarlo Mauri; Claudio Zandron (Int. J. Comput. Commun. Control, 2009)

On the Computational Power of Spiking Neural P Systems. - Alberto Leporati; Claudio Zandron; Claudio Ferretti; Giancarlo Mauri (Int. J. Unconv. Comput., 2009)

Detecting Alternative Gene Structures from Spliced ESTs: A Computational Approach. - Paola Bonizzoni; Giancarlo Mauri; Graziano Pesole; Ernesto Picardi; Yuri Pirola; Raffaella Rizzi (J. Comput. Biol., 2009)

Ontological modeling at a domain interface: bridging clinical and biomolecular knowledge. - Gianluca Colombo; Daniele Merico; Zoltán Nagy 004; Flavio De Paoli; Marco Antoniotti; Giancarlo Mauri (Knowl. Eng. Rev., 2009)

(Tissue) P systems with cell polarity. - Daniela Besozzi; Nadia Busi; Paolo Cazzaniga; Claudio Ferretti; Alberto Leporati; Giancarlo Mauri; Dario Pescini; Claudio Zandron (Math. Struct. Comput. Sci., 2009)

Complexity aspects of polarizationless membrane systems. - Alberto Leporati; Claudio Ferretti; Giancarlo Mauri; Mario J. Pérez-Jiménez; Claudio Zandron (Nat. Comput., 2009)

Uniform solutions to SAT and Subset Sum by spiking neural P systems. - Alberto Leporati; Giancarlo Mauri; Claudio Zandron; Gheorghe Paun; Mario J. Pérez-Jiménez (Nat. Comput., 2009)

A Study on the Automatic Generation of Asynchronous Cellular Automata Rules by Means of Genetic Algorithms. - Andrea Valsecchi; Leonardo Vanneschi; Giancarlo Mauri (ACRI, 2010)

Early-Stage Diagnosis of Endogenous Diseases by Swarms of Nanobots: An Applicative Scenario. - Paolo Amato; Massimo Masserini; Giancarlo Mauri; Gianfranco Cerofolini (ANTS Conference, 2010)

Computational Complexity Aspects in Membrane Computing. - Giancarlo Mauri; Alberto Leporati; Antonio E. Porreca; Claudio Zandron (CiE, 2010)

Identification of Individualized Feature Combinations for Survival Prediction in Breast Cancer: A Comparison of Machine Learning Techniques. - Leonardo Vanneschi; Antonella Farinaccio; Mario Giacobini; Giancarlo Mauri; Marco Antoniotti; Paolo Provero (EvoBIO, 2010)

On the use of genetic programming for the prediction of survival in cancer. - Antonella Farinaccio; Leonardo Vanneschi; Mario Giacobini; Giancarlo Mauri; Paolo Provero (GECCO, 2010)

Definition of a crossover based distance for genetic algorithms. - Luca Manzoni; Leonardo Vanneschi; Giancarlo Mauri (GECCO, 2010)

Optimization speed and fair sets of functions. - Andrea Valsecchi; Leonardo Vanneschi; Giancarlo Mauri (GECCO, 2010)

An empirical comparison of parallel and distributed particle swarm optimization methods. - Leonardo Vanneschi; Daniele Codecasa; Giancarlo Mauri (GECCO, 2010)

A study of parallel and distributed particle swarm optimization methods. - Leonardo Vanneschi; Daniele Codecasa; Giancarlo Mauri (BADS@ICAC, 2010)

BioSimWare: A Software for the Modeling, Simulation and Analysis of Biological Systems. - Daniela Besozzi; Paolo Cazzaniga; Giancarlo Mauri; Dario Pescini (Int. Conf. on Membrane Computing, 2010)

Modelling Spatial Heterogeneity and Macromolecular Crowding with Membrane Systems. - Ettore Mosca; Paolo Cazzaniga; Dario Pescini; Giancarlo Mauri; Luciano Milanesi (Int. Conf. on Membrane Computing, 2010)

P Systems with Elementary Active Membranes: Beyond NP and coNP. - Antonio E. Porreca; Alberto Leporati; Giancarlo Mauri; Claudio Zandron (Int. Conf. on Membrane Computing, 2010)

A Study on Gene Regulatory Network Reconstruction and Simulation. - Antonella Farinaccio; Leonardo Vanneschi; Paolo Provero; Giancarlo Mauri; Mario Giacobini (WIRN, 2010)

Fingerprint Clustering with Bounded Number of Missing Values. - Paola Bonizzoni; Gianluca Della Vedova; Riccardo Dondi; Giancarlo Mauri (Algorithmica, 2010)

An application of kernel methods to gene cluster temporal meta-analysis. - Marco Antoniotti; Marco Carreras; Antonella Farinaccio; Giancarlo Mauri; Daniele Merico; Italo Zoppis (Comput. Oper. Res., 2010)

An Analysis on the Influence of Network Topologies on Local and Global Dynamics of Metapopulation Systems - Daniela Besozzi; Paolo Cazzaniga; Dario Pescini; Giancarlo Mauri (AMCA-POP, 2010)

Non-confluence in divisionless P systems with active membranes. - Antonio E. Porreca; Giancarlo Mauri; Claudio Zandron (Theor. Comput. Sci., 2010)

A New Evolutionary Gene Regulatory Network Reverse Engineering Tool. - Antonella Farinaccio; Leonardo Vanneschi; Paolo Provero; Giancarlo Mauri; Mario Giacobini (EvoBio, 2011)

P Systems Simulating Oracle Computations. - Antonio E. Porreca; Alberto Leporati; Giancarlo Mauri; Claudio Zandron (Int. Conf. on Membrane Computing, 2011)

On the Complexity of the l-diversity Problem. - Riccardo Dondi; Giancarlo Mauri; Italo Zoppis (MFCS, 2011)

Grid Computing for Sensitivity Analysis of Stochastic Biological Models. - Ivan Merelli; Dario Pescini; Ettore Mosca; Paolo Cazzaniga; Carlo Maj; Giancarlo Mauri; Luciano Milanesi (PaCT, 2011)

A comparison of machine learning techniques for survival prediction in breast cancer. - Leonardo Vanneschi; Antonella Farinaccio; Giancarlo Mauri; Marco Antoniotti; Paolo Provero; Mario Giacobini (BioData Min., 2011)

Introduction to the Special theme - Molecular and Cellular Computing. - Giancarlo Mauri (ERCIM News, 2011)

New Robustness Paradigms: from Nature to Computing. - Giancarlo Mauri; Ion Petre (ERCIM News, 2011)

Picture Languages Generated by Assembling Tiles. - Paola Bonizzoni; Claudio Ferretti; Anthonath Roslin Sagaya Mary; Giancarlo Mauri (Fundam. Informaticae, 2011)

Modeling Diffusion in a Signal Transduction Pathway: the Use of Virtual Volumes in P Systems. - Daniela Besozzi; Paolo Cazzaniga; Stefania Cocolo; Giancarlo Mauri; Dario Pescini (Int. J. Found. Comput. Sci., 2011)

P Systems with Active Membranes Working in Polynomial Space. - Antonio E. Porreca; Alberto Leporati; Giancarlo Mauri; Claudio Zandron (Int. J. Found. Comput. Sci., 2011)

Elementary Active Membranes Have the Power of Counting. - Antonio E. Porreca; Alberto Leporati; Giancarlo Mauri; Claudio Zandron (Int. J. Nat. Comput. Res., 2011)

P systems with active membranes: trading time for space. - Antonio E. Porreca; Alberto Leporati; Giancarlo Mauri; Claudio Zandron (Nat. Comput., 2011)

A Comparative Study of Four Parallel and Distributed PSO Methods. - Leonardo Vanneschi; Daniele Codecasa; Giancarlo Mauri (New Gener. Comput., 2011)

m-Asynchronous Cellular Automata. - Alberto Dennunzio; Enrico Formenti; Luca Manzoni; Giancarlo Mauri (ACRI, 2012)

Analysis of Correlation Structures in Renal Cell Carcinoma Patient Data. - Italo Zoppis; Massimiliano Borsani; Erica Gianazza; Clizia Chinello; Francesco Rocco; Giancarlo Albo; André M. Deelder; Yuri E. M. van der Burgt; Fulvio Magni; Marco Antoniotti; Giancarlo Mauri (BIOINFORMATICS, 2012)

A GPU-Based Multi-swarm PSO Method for Parameter Estimation in Stochastic Biological Systems Exploiting Discrete-Time Target Series. - Marco S. Nobile; Daniela Besozzi; Paolo Cazzaniga; Giancarlo Mauri; Dario Pescini (EvoBIO, 2012)

Estimating reaction constants in stochastic biological systems with a multi-swarm PSO running on GPUs. - Marco S. Nobile; Daniela Besozzi; Paolo Cazzaniga; Giancarlo Mauri; Dario Pescini (GECCO (Companion), 2012)

Poster: Characterization of distinguishing regions for Renal Cell Carcinoma discrimination. - Italo Zoppis; Massimiliano Borsani; Erica Gianazza; Clizia Chinello; Giancarlo Albo; Francesco Rocco; André M. Deelder; Yuri E. M. van der Burgt; Marco Antoniotti; Fulvio Magni; Giancarlo Mauri (ICCABS, 2012)

Restricted and Swap Common Superstring: A Parameterized View. - Paola Bonizzoni; Riccardo Dondi; Giancarlo Mauri; Italo Zoppis (IPEC, 2012)

Sublinear-Space P Systems with Active Membranes. - Antonio E. Porreca; Alberto Leporati; Giancarlo Mauri; Claudio Zandron (Int. Conf. on Membrane Computing, 2012)

A Unifying Framework to Characterize the Power of a Language to Express Relations - Paola Bonizzoni; Peter J. Cameron; Gianluca Della Vedova; Alberto Leporati; Giancarlo Mauri (CoRR, 2012)

Effects of delayed immune-response in tumor immune-system interplay - Giulio Caravagna; Alex Graudenzi; Marco Antoniotti; Giancarlo Mauri; Alberto d'Onofrio (HSB, 2012)

Self-Stabilization in Membrane Systems. - Marco Antoniotti; Rudolf Freund; Alberto Leporati; Giancarlo Mauri (Comput. Sci. J. Moldova, 2012)

The role of feedback control mechanisms on the establishment of oscillatory regimes in the Ras/cAMP/PKA pathway in S. cerevisiae. - Daniela Besozzi; Paolo Cazzaniga; Dario Pescini; Giancarlo Mauri; Sonia Colombo; Enzo Martegani (EURASIP J. Bioinform. Syst. Biol., 2012)

A new clustering approach for learning transcriptional modules. - Francesco Archetti; Ilaria Giordani; Giancarlo Mauri; Enza Messina (Int. J. Data Min. Bioinform., 2012)

Preface. - Giancarlo Mauri; Alberto Leporati (Int. J. Found. Comput. Sci., 2012)

A study on learning robustness using asynchronous 1D cellular automata rules. - Leonardo Vanneschi; Giancarlo Mauri (Nat. Comput., 2012)

Mutual Information Optimization for Mass Spectra Data Alignment. - Italo Zoppis; Erica Gianazza; Massimiliano Borsani; Clizia Chinello; Veronica Mainini; Carmen Galbusera; Carlo Ferrarese; Gloria Galimberti; Alessandro Sorbi; Barbara Borroni; Fulvio Magni; Marco Antoniotti; et al. (IEEE ACM Trans. Comput. Biol. Bioinform., 2012)

An excursion in reaction systems: From computer science to biology. - Luca Corolli; Carlo Maj; Fabrizio Marini; Daniela Besozzi; Giancarlo Mauri (Theor. Comput. Sci., 2012)

A distance between populations for one-point crossover in genetic algorithms. - Luca Manzoni; Leonardo Vanneschi; Giancarlo Mauri (Theor. Comput. Sci., 2012)

A study of the neutrality of Boolean function landscapes in genetic programming. - Leonardo Vanneschi; Yuri Pirola; Giancarlo Mauri; Marco Tomassini; Philippe Collard; Sébastien Vérel (Theor. Comput. Sci., 2012)

An Empirical Study of Parallel and Distributed Particle Swarm Optimization. - Leonardo Vanneschi; Daniele Codecasa; Giancarlo Mauri (Parallel Architectures and Bioinspired Algorithms, 2012)

Copy-Number Alterations for Tumor Progression Inference. - Claudia Cava; Italo Zoppis; Manuela Gariboldi; Isabella Castiglioni; Giancarlo Mauri; Marco Antoniotti (AIME, 2013)

The foundation of Evolutionary Petri Nets. - Marco S. Nobile; Daniela Besozzi; Paolo Cazzaniga; Giancarlo Mauri (BioPPN@Petri Nets, 2013)

Candidate biomarkers for response to tamoxifen in breast cancer metastatic patients. - Claudia Cava; Gloria Bertoli; Italo Zoppis; Giancarlo Mauri; Maria Carla Gilardi; Isabella Castiglioni (BIBE, 2013)

Reverse engineering of kinetic reaction networks by means of Cartesian Genetic Programming and Particle Swarm Optimization. - Marco S. Nobile; Daniela Besozzi; Paolo Cazzaniga; Dario Pescini; Giancarlo Mauri (IEEE Congress on Evolutionary Computation, 2013)

Combination of gene expression and genome copy number alteration has a prognostic value for breast cancer. - Claudia Cava; Italo Zoppis; Giancarlo Mauri; M. Ripamonti; Francesca Gallivanone; Christian Salvatore; Maria Carla Gilardi; Isabella Castiglioni (EMBC, 2013)

Evolutionary inference of biochemical reaction networks accelerated on graphics processing units. - Marco S. Nobile; Giancarlo Mauri (HPCS, 2013)

Flattening in (Tissue) P Systems. - Rudolf Freund; Alberto Leporati; Giancarlo Mauri; Antonio E. Porreca; Sergey Verlan; Claudio Zandron (Int. Conf. on Membrane Computing, 2013)

Enzymatic Numerical P Systems Using Elementary Arithmetic Operations. - Alberto Leporati; Giancarlo Mauri; Antonio E. Porreca; Claudio Zandron (Int. Conf. on Membrane Computing, 2013)

cupSODA: A CUDA-Powered Simulator of Mass-Action Kinetics. - Marco S. Nobile; Daniela Besozzi; Paolo Cazzaniga; Giancarlo Mauri; Dario Pescini (PaCT, 2013)

NoisySim: exact simulation of stochastic chemically reacting systems with extrinsic bounded noises (WIP). - Giulio Caravagna; Alberto d'Onofrio; Giancarlo Mauri (SpringSim (TMS-DEVS), 2013)

GeStoDifferent: a Cytoscape plugin for the generation and the identification of gene regulatory networks describing a stochastic cell differentiation process. - Marco Antoniotti; Gary D. Bader; Giulio Caravagna; Silvia Crippa; Alex Graudenzi; Giancarlo Mauri (Bioinform., 2013)

A Hybrid Monte Carlo Ant Colony Optimization Approach for Protein Structure Prediction in the HP Model. - Andrea G. Citrolo; Giancarlo Mauri (WIVACE, 2013)

An ensemble approach to the study of the emergence of metabolic and proliferative disorders via Flux Balance Analysis. - Chiara Damiani; Riccardo Colombo; Sara Molinari; Dario Pescini; Daniela Gaglio; Marco Vanoni; Lilia Alberghina; Giancarlo Mauri (WIVACE, 2013)

Improved Universality Results for Parallel Enzymatic Numerical P Systems. - Alberto Leporati; Antonio E. Porreca; Claudio Zandron; Giancarlo Mauri (Int. J. Unconv. Comput., 2013)

Sensitivity Analysis for Studying the Relation between biochemical reactions and metabolic phenotypes. - Carlo Maj; Ettore Mosca; Ivan Merelli; Giancarlo Mauri; Luciano Milanesi (J. Bioinform. Comput. Biol., 2013)

Availability of MudPIT data for classification of biological samples. - Dario Silvestre; Italo Zoppis; Francesca Brambilla; Valeria Bellettato; Giancarlo Mauri; Pierluigi Mauri (J. Clin. Bioinform., 2013)

m-Asynchronous cellular automata: from fairness to quasi-fairness. - Alberto Dennunzio; Enrico Formenti; Luca Manzoni; Giancarlo Mauri (Nat. Comput., 2013)

The l-Diversity problem: Tractability and approximability. - Riccardo Dondi; Giancarlo Mauri; Italo Zoppis (Theor. Comput. Sci., 2013)

Towards the Use of Genetic Programming for the Prediction of Survival in Cancer. - Mario Giacobini; Paolo Provero; Leonardo Vanneschi; Giancarlo Mauri (Evolution, Complexity and Artificial Life, 2014)

A memetic hybrid method for the Molecular Distance Geometry Problem with incomplete information. - Marco S. Nobile; Andrea G. Citrolo; Paolo Cazzaniga; Daniela Besozzi; Giancarlo Mauri (IEEE Congress on Evolutionary Computation, 2014)

Self-adaptive simulation time for sensitivity analysis of a stochastic computational model. - Carlo Maj; Claudia Raibulet; Giancarlo Mauri (ECC, 2014)

Simulating Elementary Active Membranes - with an Application to the P Conjecture. - Alberto Leporati; Luca Manzoni; Giancarlo Mauri; Antonio E. Porreca; Claudio Zandron (Int. Conf. on Membrane Computing, 2014)

P Systems with Active Membranes Working in Sublinear Space. - Claudio Zandron; Alberto Leporati; Luca Manzoni; Giancarlo Mauri; Antonio E. Porreca (Int. Conf. on Membrane Computing, 2014)

Simulation and Analysis of the Blood Coagulation Cascade Accelerated on GPU. - Matteo Bellini; Daniela Besozzi; Paolo Cazzaniga; Giancarlo Mauri; Marco S. Nobile (PDP, 2014)

Obituary Alberto Bertoni (1946-2014). - Giancarlo Mauri; Nicoletta Sabadini (Bull. EATCS, 2014)

Constant-Space P Systems with Active Membranes. - Alberto Leporati; Luca Manzoni; Giancarlo Mauri; Antonio E. Porreca; Claudio Zandron (Fundam. Informaticae, 2014)

Stochastic Hybrid Automata with delayed transitions to model biochemical systems with delays. - Giulio Caravagna; Alberto d'Onofrio; Marco Antoniotti; Giancarlo Mauri (Inf. Comput., 2014)

Preface. - Alberto Dennunzio; Luca Manzoni; Giancarlo Mauri; Antonio E. Porreca (Int. J. Found. Comput. Sci., 2014)

P Systems with Active Membranes Working in Logarithmic Space. - Alberto Leporati; Giancarlo Mauri; Antonio E. Porreca; Claudio Zandron (J. Autom. Lang. Comb., 2014)

Combined analysis of chromosomal instabilities and gene expression for colon cancer progression inference. - Claudia Cava; Italo Zoppis; Manuela Gariboldi; Isabella Castiglioni; Giancarlo Mauri; Marco Antoniotti (J. Clin. Bioinform., 2014)

A study of search algorithms' optimization speed. - Andrea Valsecchi; Leonardo Vanneschi; Giancarlo Mauri (J. Comb. Optim., 2014)

A local landscape mapping method for protein structure prediction in the HP model. - Andrea G. Citrolo; Giancarlo Mauri (Nat. Comput., 2014)

An ensemble evolutionary constraint-based approach to understand the emergence of metabolic phenotypes. - Chiara Damiani; Dario Pescini; Riccardo Colombo; Sara Molinari; Lilia Alberghina; Marco Vanoni; Giancarlo Mauri (Nat. Comput., 2014)

Preface. - Alex Graudenzi; Giulio Caravagna; Giancarlo Mauri (Nat. Comput., 2014)

Space complexity equivalence of P systems with active membranes and Turing machines. - Artiom Alhazov; Alberto Leporati; Giancarlo Mauri; Antonio E. Porreca; Claudio Zandron (Theor. Comput. Sci., 2014)

GPU-accelerated simulations of mass-action kinetics models with cupSODA. - Marco S. Nobile; Paolo Cazzaniga; Daniela Besozzi; Giancarlo Mauri (J. Supercomput., 2014)

Proactive Particles in Swarm Optimization: A self-tuning algorithm based on Fuzzy Logic. - Marco S. Nobile; Gabriella Pasi; Paolo Cazzaniga; Daniela Besozzi; Riccardo Colombo; Giancarlo Mauri (FUZZ-IEEE, 2015)

Robust Conclusions in Mass Spectrometry Analysis. - Italo Zoppis; Riccardo Dondi; Massimiliano Borsani; Erica Gianazza; Clizia Chinello; Fulvio Magni; Giancarlo Mauri (ICCS, 2015)

Complexity Classes for Membrane Systems: A Survey. - Giancarlo Mauri; Alberto Leporati; Luca Manzoni; Antonio E. Porreca; Claudio Zandron (LATA, 2015)

Tissue P Systems Can be Simulated Efficiently with Counting Oracles. - Alberto Leporati; Luca Manzoni; Giancarlo Mauri; Antonio E. Porreca; Claudio Zandron (Int. Conf. on Membrane Computing, 2015)

Parallelizing Biochemical Stochastic Simulations: A Comparison of GPUs and Intel Xeon Phi Processors. - Paolo Cazzaniga; F. Ferrara; Marco S. Nobile; Daniela Besozzi; Giancarlo Mauri (PaCT, 2015)

Restricted and Swap Common Superstring: A Multivariate Algorithmic Perspective. - Paola Bonizzoni; Riccardo Dondi; Giancarlo Mauri; Italo Zoppis (Algorithmica, 2015)

CAPRI: efficient inference of cancer progression models from cross-sectional data. - Daniele Ramazzotti; Giulio Caravagna; Loes Olde Loohuis; Alex Graudenzi; Ilya Korsunsky; Giancarlo Mauri; Marco Antoniotti; Bud Mishra (Bioinform., 2015)

Membrane Division, Oracles, and the Counting Hierarchy. - Alberto Leporati; Luca Manzoni; Giancarlo Mauri; Antonio E. Porreca; Claudio Zandron (Fundam. Informaticae, 2015)

Recent complexity-theoretic results on P systems with active membranes. - Giancarlo Mauri; Alberto Leporati; Antonio E. Porreca; Claudio Zandron (J. Log. Comput., 2015)

Foreword: asynchronous behavior of cellular automata and discrete models. - Alberto Dennunzio; Enrico Formenti; Giancarlo Mauri; Thomas Worsch (Nat. Comput., 2015)

Neuro-Radiosurgery Treatments: MRI Brain Tumor Seeded Image Segmentation Based on a Cellular Automata Model. - Leonardo Rundo; Carmelo Militello; Giorgio Russo; Pietro Pisciotta; Lucia Maria Valastro; Maria Gabriella Sabini; Salvatore Vitabile; Maria Carla Gilardi; Giancarlo Mauri (ACRI, 2016)

Constraining Mechanism Based Simulations to Identify Ensembles of Parametrizations to Characterize Metabolic Features. - Riccardo Colombo; Chiara Damiani; Giancarlo Mauri; Dario Pescini (CIBB, 2016)

COSYS: A Computational Infrastructure for Systems Biology. - Fabio Cumbo; Marco S. Nobile; Chiara Damiani; Riccardo Colombo; Giancarlo Mauri; Paolo Cazzaniga (CIBB, 2016)

Parallel implementation of efficient search schemes for the inference of cancer progression models. - Daniele Ramazzotti; Marco S. Nobile; Paolo Cazzaniga; Giancarlo Mauri; Marco Antoniotti (CIBCB, 2016)

Trend of FEV1 in Cystic Fibrosis patients: A telehomecare experience. - Fabrizio Murgia; Irene Tagliente; Italo Zoppis; Giancarlo Mauri; Francesco Sicurello; Francesco Bella; Vanessa Mercuri; Eugenio Santoro; Gianluca Castelnuovo; Sergio Bella (ISCC, 2016)

Clique Editing to Support Case Versus Control Discrimination. - Riccardo Dondi; Giancarlo Mauri; Italo Zoppis (KES-IDT (1), 2016)

Shallow Non-confluent P Systems. - Alberto Leporati; Luca Manzoni; Giancarlo Mauri; Antonio E. Porreca; Claudio Zandron (Int. Conf. on Membrane Computing, 2016)

DIABESITY: A Study for mHealth Integrated Solutions. - Italo Zoppis; Giancarlo Mauri; Francesco Sicurello; Eugenio Santoro; Giada Pietrabissa; Gianluca Castelnuovo (MobiHealth, 2016)

Multimodal medical image registration using Particle Swarm Optimization: A review. - Leonardo Rundo; Andrea Tangherloni; Carmelo Militello; Maria Carla Gilardi; Giancarlo Mauri (SSCI, 2016)

Linking Alterations in Metabolic Fluxes with Shifts in Metabolite Levels by Means of Kinetic Modeling. - Chiara Damiani; Riccardo Colombo; Marzia Di Filippo; Dario Pescini; Giancarlo Mauri (WIVACE, 2016)

Constraint-Based Modeling and Simulation of Cell Populations. - Marzia Di Filippo; Chiara Damiani; Riccardo Colombo; Dario Pescini; Giancarlo Mauri (WIVACE, 2016)

A Support Vector Machine Classification of Thyroid Bioptic Specimens Using MALDI-MSI Data. - Manuel Galli; Italo Zoppis; Gabriele De Sio; Clizia Chinello; Fabio Pagni; Fulvio Magni; Giancarlo Mauri (Adv. Bioinformatics, 2016)

TRONCO: an R package for the inference of cancer progression models from heterogeneous genomic data. - Luca De Sano; Giulio Caravagna; Daniele Ramazzotti; Alex Graudenzi; Giancarlo Mauri; Bud Mishra; Marco Antoniotti (Bioinform., 2016)

How interacting pathways are regulated by miRNAs in breast cancer subtypes. - Claudia Cava; Antonio Colaprico; Gloria Bertoli; Gianluca Bontempi; Giancarlo Mauri; Isabella Castiglioni (BMC Bioinform., 2016)

BITS 2015: the annual meeting of the Italian Society of Bioinformatics. - Luciano Milanesi; Alessandro Guffanti; Giancarlo Mauri; Marco Masseroli (BMC Bioinform., 2016)

CABeRNET: a Cytoscape app for augmented Boolean models of gene regulatory NETworks. - Andrea Paroni; Alex Graudenzi; Giulio Caravagna; Chiara Damiani; Giancarlo Mauri; Marco Antoniotti (BMC Bioinform., 2016)

Zooming-in on cancer metabolic rewiring with tissue specific constraint-based models. - Marzia Di Filippo; Riccardo Colombo; Chiara Damiani; Dario Pescini; Daniela Gaglio; Marco Vanoni; Lilia Alberghina; Giancarlo Mauri (Comput. Biol. Chem., 2016)

Ordering cancer mutational profiles of cross-sectional copy number alterations. - Alex Graudenzi; Giulio Caravagna; Iuliana M. Bocicor; Claudia Cava; Marco Antoniotti; Giancarlo Mauri (Int. J. Data Min. Bioinform., 2016)

Monodirectional P systems. - Alberto Leporati; Luca Manzoni; Giancarlo Mauri; Antonio E. Porreca; Claudio Zandron (Nat. Comput., 2016)

Design of the TRONCO BioConductor Package for TRanslational ONCOlogy. - Marco Antoniotti; Giulio Caravagna; Luca De Sano; Alex Graudenzi; Giancarlo Mauri; Bud Mishra; Daniele Ramazzotti (R J., 2016)

The Longest Filled Common Subsequence Problem. - Mauro Castelli; Riccardo Dondi; Giancarlo Mauri; Italo Zoppis (CPM, 2017)

Orthology Correction for Gene Tree Reconstruction: Theoretical and Experimental Results. - Riccardo Dondi; Giancarlo Mauri; Italo Zoppis (ICCS, 2017)

Solving a Special Case of the P Conjecture Using Dependency Graphs with Dissolution. - Alberto Leporati; Luca Manzoni; Giancarlo Mauri; Antonio E. Porreca; Claudio Zandron (Int. Conf. on Membrane Computing, 2017)

Accelerated Analysis of Biological Parameters Space Using GPUs. - Marco S. Nobile; Giancarlo Mauri (PaCT, 2017)

popFBA: tackling intratumour heterogeneity with Flux Balance Analysis. - Chiara Damiani; Marzia Di Filippo; Dario Pescini; Davide Maspero; Riccardo Colombo; Giancarlo Mauri (Bioinform., 2017)

GPU-powered model analysis with PySB/cupSODA. - Leonard A. Harris; Marco S. Nobile; James C. Pino; Alexander L. R. Lubbock; Daniela Besozzi; Giancarlo Mauri; Paolo Cazzaniga; Carlos F. Lopez (Bioinform., 2017)

LASSIE: simulating large-scale models of biochemical systems on GPUs. - Andrea Tangherloni; Marco S. Nobile; Daniela Besozzi; Giancarlo Mauri; Paolo Cazzaniga (BMC Bioinform., 2017)

Area-based cell colony surviving fraction evaluation: A novel fully automatic approach using general-purpose acquisition hardware. - Carmelo Militello; Leonardo Rundo; Vincenzo Conti; Luigi Minafra; Francesco Paolo Cammarata; Giancarlo Mauri; Maria Carla Gilardi; Nunziatina Porcino (Comput. Biol. Medicine, 2017)

A fully automatic approach for multimodal PET and MR image segmentation in gamma knife treatment planning. - Leonardo Rundo; Alessandro Stefano; Carmelo Militello; Giorgio Russo; Maria Gabriella Sabini; Corrado D'Arrigo; Francesco Marletta; Massimo Ippolito; Giancarlo Mauri; Salvatore Vitabile; Maria Carla Gilardi (Comput. Methods Programs Biomed., 2017)

From protein-protein interactions to protein co-expression networks: a new perspective to evaluate large-scale proteomic data. - Danila Vella; Italo Zoppis; Giancarlo Mauri; Pierluigi Mauri; Dario Silvestre (EURASIP J. Bioinform. Syst. Biol., 2017)

Tissue P Systems with Small Cell Volume. - Alberto Leporati; Luca Manzoni; Giancarlo Mauri; Antonio E. Porreca; Claudio Zandron (Fundam. Informaticae, 2017)

Efficient Simulation of Reaction Systems on Graphics Processing Units. - Marco S. Nobile; Antonio E. Porreca; Simone Spolaor; Luca Manzoni; Paolo Cazzaniga; Giancarlo Mauri; Daniela Besozzi (Fundam. Informaticae, 2017)

Automated Prostate Gland Segmentation Based on an Unsupervised Fuzzy C-Means Clustering Technique Using Multispectral T1w and T2w MR Imaging. - Leonardo Rundo; Carmelo Militello; Giorgio Russo; Antonio Garufi; Salvatore Vitabile; Maria Carla Gilardi; Giancarlo Mauri (Inf., 2017)

Characterising the complexity of tissue P systems with fission rules. - Alberto Leporati; Luca Manzoni; Giancarlo Mauri; Antonio E. Porreca; Claudio Zandron (J. Comput. Syst. Sci., 2017)

Resource-Efficient Hardware Implementation of a Neural-based Node for Automatic Fingerprint Classification. - Vincenzo Conti; Leonardo Rundo; Carmelo Militello; Giancarlo Mauri; Salvatore Vitabile (J. Wirel. Mob. Networks Ubiquitous Comput. Dependable Appl., 2017)

A metabolic core model elucidates how enhanced utilization of glucose and glutamine, with enhanced glutamine-dependent lactate production, promotes cancer cell growth: The WarburQ effect. - Chiara Damiani; Riccardo Colombo; Daniela Gaglio; Fabrizia Mastroianni; Dario Pescini; Hans V. Westerhoff; Giancarlo Mauri; Marco Vanoni; Lilia Alberghina (PLoS Comput. Biol., 2017)

Computational complexity of finite asynchronous cellular automata. - Alberto Dennunzio; Enrico Formenti; Luca Manzoni; Giancarlo Mauri; Antonio E. Porreca (Theor. Comput. Sci., 2017)

A toolbox for simpler active membrane algorithms. - Alberto Leporati; Luca Manzoni; Giancarlo Mauri; Antonio E. Porreca; Claudio Zandron (Theor. Comput. Sci., 2017)

The counting power of P systems with antimatter. - Alberto Leporati; Luca Manzoni; Giancarlo Mauri; Antonio E. Porreca; Claudio Zandron (Theor. Comput. Sci., 2017)

Gillespie's Stochastic Simulation Algorithm on MIC coprocessors. - Andrea Tangherloni; Marco S. Nobile; Paolo Cazzaniga; Daniela Besozzi; Giancarlo Mauri (J. Supercomput., 2017)

Patient Engagement: Theoretical and Heuristic Approaches for Supporting the Clinical Practice. - Italo Zoppis; Riccardo Dondi; Sara Manzoni; Giancarlo Mauri (AI*AAL@AI*IA, 2018)

Optimizing Social Interaction - A Computational Approach to Support Patient Engagement. - Italo Zoppis; Riccardo Dondi; Eugenio Santoro; Gianluca Castelnuovo; Francesco Sicurello; Giancarlo Mauri (HEALTHINF, 2018)

Open Problems in Membrane Computing and How Not to Solve Them. - Alberto Leporati; Luca Manzoni; Giancarlo Mauri; Antonio E. Porreca; Claudio Zandron (Enjoying Natural Computing, 2018)

Computational Intelligence for Parameter Estimation of Biochemical Systems. - Marco S. Nobile; Andrea Tangherloni; Leonardo Rundo; Simone Spolaor; Daniela Besozzi; Giancarlo Mauri; Paolo Cazzaniga (CEC, 2018)

High Performance Computing for Haplotyping: Models and Platforms. - Andrea Tangherloni; Leonardo Rundo; Simone Spolaor; Marco S. Nobile; Ivan Merelli; Daniela Besozzi; Giancarlo Mauri; Paolo Cazzaniga; Pietro Liò (Euro-Par Workshops, 2018)

GAN-based synthetic brain MR image generation. - Changhee Han; Hideaki Hayashi; Leonardo Rundo; Ryosuke Araki; Wataru Shimoda; Shinichi Muramatsu; Yujiro Furukawa; Giancarlo Mauri; Hideki Nakayama (ISBI, 2018)

Covering with Clubs: Complexity and Approximability. - Riccardo Dondi; Giancarlo Mauri; Florian Sikora; Italo Zoppis (IWOCA, 2018)

Solving QSAT in Sublinear Depth. - Alberto Leporati; Luca Manzoni; Giancarlo Mauri; Antonio E. Porreca; Claudio Zandron (Int. Conf. on Membrane Computing, 2018)

Distributed Heuristics for Optimizing Cohesive Groups: A Support for Clinical Patient Engagement in Social Network Analysis. - Italo Zoppis; Riccardo Dondi; Davide Coppetti; Alessandro Beltramo; Giancarlo Mauri (PDP, 2018)

Synchronization Effects in a Metabolism-Driven Model of Multi-cellular System. - Davide Maspero; Alex Graudenzi; Satwinder Singh; Dario Pescini; Giancarlo Mauri; Marco Antoniotti; Chiara Damiani (WIVACE, 2018)

Emerging ensembles of kinetic parameters to characterize observed metabolic phenotypes. - Riccardo Colombo; Chiara Damiani; David R. Gilbert; Monika Heiner; Giancarlo Mauri; Dario Pescini (BMC Bioinform., 2018)

NeXt for neuro-radiosurgery: A fully automatic approach for necrosis extraction in brain tumor MRI using an unsupervised machine learning technique. - Leonardo Rundo; Carmelo Militello; Andrea Tangherloni; Giorgio Russo; Salvatore Vitabile; Maria Carla Gilardi; Giancarlo Mauri (Int. J. Imaging Syst. Technol., 2018)

Integration of transcriptomic data and metabolic networks in cancer samples reveals highly significant prognostic power. - Alex Graudenzi; Davide Maspero; Marzia Di Filippo; Marco Gnugnoli; Claudio Isella; Giancarlo Mauri; Enzo Medico; Marco Antoniotti; Chiara Damiani (J. Biomed. Informatics, 2018)

Preface. - Stefania Bandini; Samira El Yacoubi; Giancarlo Mauri; Jaroslaw Was (Nat. Comput., 2018)

GTVcut for neuro-radiosurgery treatment planning: an MRI brain cancer seeded image segmentation method based on a cellular automata model. - Leonardo Rundo; Carmelo Militello; Giorgio Russo; Salvatore Vitabile; Maria Carla Gilardi; Giancarlo Mauri (Nat. Comput., 2018)

Fuzzy Self-Tuning PSO: A settings-free algorithm for global optimization. - Marco S. Nobile; Paolo Cazzaniga; Daniela Besozzi; Riccardo Colombo; Giancarlo Mauri; Gabriella Pasi (Swarm Evol. Comput., 2018)

Editorial. - Riccardo Dondi; Guillaume Fertin; Giancarlo Mauri (Theor. Comput. Sci., 2018)

Fully Automatic Multispectral MR Image Segmentation of Prostate Gland Based on the Fuzzy C-Means Clustering Algorithm. - Leonardo Rundo; Carmelo Militello; Giorgio Russo; Davide D'Urso; Lucia Maria Valastro; Antonio Garufi; Giancarlo Mauri; Salvatore Vitabile; Maria Carla Gilardi (Multidisciplinary Approaches to Neural Computing, 2018)

A Computational Model for Promoting Targeted Communication and Supplying Social Explainable Recommendations. - Italo Zoppis; Sara Manzoni; Giancarlo Mauri (CBMS, 2019)

Integration of Single-Cell RNA-Sequencing Data into Flux Balance Cellular Automata. - Davide Maspero; Marzia Di Filippo; Fabrizio Angaroni; Dario Pescini; Giancarlo Mauri; Marco Vanoni; Alex Graudenzi; Chiara Damiani (CIBB, 2019)

ProCell: Investigating cell proliferation with Swarm Intelligence. - Marco S. Nobile; Thalia Vlachou; Simone Spolaor; Paolo Cazzaniga; Giancarlo Mauri; Pier Giuseppe Pelicci; Daniela Besozzi (CIBCB, 2019)

Optimized Social Explanation for Educational Platforms. - Italo Zoppis; Riccardo Dondi; Sara Manzoni; Giancarlo Mauri; Luca Marconi; Francesco Epifania (CSEDU (1), 2019)

Top k 2-Clubs in a Network: A Genetic Algorithm. - Mauro Castelli; Riccardo Dondi; Sara Manzoni; Giancarlo Mauri; Italo Zoppis (ICCS (5), 2019)

Top-k Overlapping Densest Subgraphs: Approximation and Complexity. - Riccardo Dondi; Mohammad Mehdi Hosseinzadeh; Giancarlo Mauri; Italo Zoppis (ICTCS, 2019)

Nudges Driven Networks: Towards More Acceptable Recommendations for Inducing Targeted Social Communities. - Italo Zoppis; Sara Manzoni; Giancarlo Mauri; Giada Pietrabissa; Andrea Trentini; Daniela Micucci; Gianluca Castelnuovo (INSCI, 2019)

System of Nudge Theory-Based ICT Applications for Older Citizens: The SENIOR Project. - Giada Pietrabissa; Italo Zoppis; Giancarlo Mauri; Roberta Ghiretti; Emanuele Maria Giusti; Roberto Cattivelli; Chiara Spatola; Gian Mauro Manzoni; Gianluca Castelnuovo (MindCare, 2019)

HaraliCU: GPU-Powered Haralick Feature Extraction on Medical Images Exploiting the Full Dynamics of Gray-Scale Levels. - Leonardo Rundo; Andrea Tangherloni; Simone Galimberti; Paolo Cazzaniga; Ramona Woitek; Evis Sala; Marco S. Nobile; Giancarlo Mauri (PaCT, 2019)

Combining Noise-to-Image and Image-to-Image GANs: Brain MR Image Augmentation for Tumor Detection. - Changhee Han; Leonardo Rundo; Ryosuke Araki; Yudai Nagano; Yujiro Furukawa; Giancarlo Mauri; Hideki Nakayama; Hideaki Hayashi (IEEE Access, 2019)

Biochemical parameter estimation vs. benchmark functions: A comparative study of optimization performance and representation design. - Andrea Tangherloni; Simone Spolaor; Paolo Cazzaniga; Daniela Besozzi; Leonardo Rundo; Giancarlo Mauri; Marco S. Nobile (Appl. Soft Comput., 2019)

Modeling cell proliferation in human acute myeloid leukemia xenografts. - Marco S. Nobile; Thalia Vlachou; Simone Spolaor; Daniela Bossi; Paolo Cazzaniga; Luisa Lanfrancone; Giancarlo Mauri; Pier Giuseppe Pelicci; Daniela Besozzi (Bioinform., 2019)

GenHap: a novel computational method based on genetic algorithms for haplotype assembly. - Andrea Tangherloni; Simone Spolaor; Leonardo Rundo; Marco S. Nobile; Paolo Cazzaniga; Giancarlo Mauri; Pietro Liò; Ivan Merelli; Daniela Besozzi (BMC Bioinform., 2019)

A novel framework for MR image segmentation and quantification by using MedGA. - Leonardo Rundo; Andrea Tangherloni; Paolo Cazzaniga; Marco S. Nobile; Giorgio Russo; Maria Carla Gilardi; Salvatore Vitabile; Giancarlo Mauri; Daniela Besozzi; Carmelo Militello (Comput. Methods Programs Biomed., 2019)

Infinite Brain MR Images: PGGAN-based Data Augmentation for Tumor Detection. - Changhee Han; Leonardo Rundo; Ryosuke Araki; Yujiro Furukawa; Giancarlo Mauri; Hideki Nakayama; Hideaki Hayashi (CoRR, 2019)

CNN-based Prostate Zonal Segmentation on T2-weighted MR Images: A Cross-dataset Study. - Leonardo Rundo; Changhee Han; Jin Zhang; Ryuichiro Hataya; Yudai Nagano; Carmelo Militello; Claudio Ferretti; Marco S. Nobile; Andrea Tangherloni; Maria Carla Gilardi; Salvatore Vitabile; Hideki Nakayama; et al. (CoRR, 2019)

MedGA: A novel evolutionary method for image enhancement in medical imaging systems. - Leonardo Rundo; Andrea Tangherloni; Marco S. Nobile; Carmelo Militello; Daniela Besozzi; Giancarlo Mauri; Paolo Cazzaniga (Expert Syst. Appl., 2019)

USE-Net: Incorporating Squeeze-and-Excitation blocks into U-Net for prostate zonal segmentation of multi-institutional MRI datasets. - Leonardo Rundo; Changhee Han; Yudai Nagano; Jin Zhang; Ryuichiro Hataya; Carmelo Militello; Andrea Tangherloni; Marco S. Nobile; Claudio Ferretti; Daniela Besozzi; Maria Carla Gilardi; Salvatore Vitabile; et al. (Neurocomputing, 2019)

Covering a Graph with Clubs. - Riccardo Dondi; Giancarlo Mauri; Florian Sikora; Italo Zoppis (J. Graph Algorithms Appl., 2019)

Characterizing PSPACE with shallow non-confluent P systems. - Alberto Leporati; Luca Manzoni; Giancarlo Mauri; Antonio E. Porreca; Claudio Zandron (J. Membr. Comput., 2019)

Preface. - Giancarlo Mauri; Samira El Yacoubi; Stefania Bandini (Nat. Comput., 2019)

Integration of single-cell RNA-seq data into population models to characterize cancer metabolism. - Chiara Damiani; Davide Maspero; Marzia Di Filippo; Riccardo Colombo; Dario Pescini; Alex Graudenzi; Hans V. Westerhoff; Lilia Alberghina; Marco Vanoni; Giancarlo Mauri (PLoS Comput. Biol., 2019)

Comparing incomplete sequences via longest common subsequence. - Mauro Castelli; Riccardo Dondi; Giancarlo Mauri; Italo Zoppis (Theor. Comput. Sci., 2019)

On the tractability of finding disjoint clubs in a network. - Riccardo Dondi; Giancarlo Mauri; Italo Zoppis (Theor. Comput. Sci., 2019)

ginSODA: massive parallel integration of stiff ODE systems on GPUs. - Marco S. Nobile; Paolo Cazzaniga; Daniela Besozzi; Giancarlo Mauri (J. Supercomput., 2019)

Graph Isomorphism. - Riccardo Dondi; Giancarlo Mauri; Italo Zoppis (Encyclopedia of Bioinformatics and Computational Biology (1), 2019)

Graph Algorithms. - Riccardo Dondi; Giancarlo Mauri; Italo Zoppis (Encyclopedia of Bioinformatics and Computational Biology (1), 2019)

Kernel Machines: Introduction. - Italo Zoppis; Giancarlo Mauri; Riccardo Dondi (Encyclopedia of Bioinformatics and Computational Biology (1), 2019)

Kernel Methods: Support Vector Machines. - Italo Zoppis; Giancarlo Mauri; Riccardo Dondi (Encyclopedia of Bioinformatics and Computational Biology (1), 2019)

Kernel Machines: Applications. - Italo Zoppis; Giancarlo Mauri; Riccardo Dondi (Encyclopedia of Bioinformatics and Computational Biology (1), 2019)

Towards Human Cell Simulation. - Simone Spolaor; Marco Gribaudo; Mauro Iacono; Tomas Kadavy; Zuzana Komínková Oplatková; Giancarlo Mauri; Sabri Pllana; Roman Senkerik; Natalija Stojanovic; Esko Turunen; Adam Viktorin; Salvatore Vitabile; et al. (High-Performance Modelling and Simulation for Big Data Applications, 2019)

Computer-Assisted Approaches for Uterine Fibroid Segmentation in MRgFUS Treatments: Quantitative Evaluation and Clinical Feasibility Analysis. - Leonardo Rundo; Carmelo Militello; Andrea Tangherloni; Giorgio Russo; Roberto Lagalla; Giancarlo Mauri; Maria Carla Gilardi; Salvatore Vitabile (Quantifying and Processing Biomedical and Behavioral Signals, 2019)

Approaching Explainable Recommendations for Personalized Social Learning: the Current Stage in the Educational Platform "WhoTeach". - Luca Marconi; Ricardo Anibal Matamoros Aragon; Italo Zoppis; Sara Manzoni; Giancarlo Mauri; Francesco Epifania (XAI.it@AI*IA, 2020)

Explainable Attentional Neural Recommendations for Personalized Social Learning. - Luca Marconi; Ricardo Anibal Matamoros Aragon; Italo Zoppis; Sara Manzoni; Giancarlo Mauri; Francesco Epifania (AI*IA, 2020)

An Attention-based Architecture for EEG Classification. - Italo Zoppis; Alessio Zanga; Sara Manzoni; Giulia Cisotto; Angela Morreale; Fabio Stella; Giancarlo Mauri (BIOSIGNALS, 2020)

Attentional Neural Mechanisms for Social Recommendations in Educational Platforms. - Italo Zoppis; Sara Manzoni; Giancarlo Mauri; Ricardo Anibal Matamoros Aragon; Luca Marconi; Francesco Epifania (CSEDU (1), 2020)

Complexity Issues of String to Graph Approximate Matching. - Riccardo Dondi; Giancarlo Mauri; Italo Zoppis (LATA, 2020)

Fuzzy modeling and global optimization to predict novel therapeutic targets in cancer cells. - Marco S. Nobile; Giuseppina Votta; Roberta Palorini; Simone Spolaor; Humberto De Vitto; Paolo Cazzaniga; Francesca Ricciardiello; Giancarlo Mauri; Lilia Alberghina; Ferdinando Chiaradonna; Daniela Besozzi (Bioinform., 2020)

Surfing on Fitness Landscapes: A Boost on Optimization by Fourier Surrogate Modeling. - Luca Manzoni; Daniele M. Papetti; Paolo Cazzaniga; Simone Spolaor; Giancarlo Mauri; Daniela Besozzi; Marco S. Nobile (Entropy, 2020)

Shallow laconic P systems can count. - Alberto Leporati; Luca Manzoni; Giancarlo Mauri; Antonio E. Porreca; Claudio Zandron (J. Membr. Comput., 2020)

A Turing machine simulation by P systems without charges. - Alberto Leporati; Luca Manzoni; Giancarlo Mauri; Antonio E. Porreca; Claudio Zandron (J. Membr. Comput., 2020)

Simulating counting oracles with cooperation. - Alberto Leporati; Luca Manzoni; Giancarlo Mauri; Antonio E. Porreca; Claudio Zandron (J. Membr. Comput., 2020)

Subroutines in P systems and closure properties of their complexity classes. - Alberto Leporati; Luca Manzoni; Giancarlo Mauri; Antonio E. Porreca; Claudio Zandron (Theor. Comput. Sci., 2020)

Coupling Mechanistic Approaches and Fuzzy Logic to Model and Simulate Complex Systems. - Simone Spolaor; Marco S. Nobile; Giancarlo Mauri; Paolo Cazzaniga; Daniela Besozzi (IEEE Trans. Fuzzy Syst., 2020)

cuProCell: GPU-Accelerated Analysis of Cell Proliferation With Flow Cytometry Data. - Marco S. Nobile; Eric Nisoli; Thalia Vlachou; Simone Spolaor; Paolo Cazzaniga; Giancarlo Mauri; Pier Giuseppe Pelicci; Daniela Besozzi (IEEE J. Biomed. Health Informatics, 2020)

Infinite Brain MR Images: PGGAN-Based Data Augmentation for Tumor Detection. - Changhee Han; Leonardo Rundo; Ryosuke Araki; Yujiro Furukawa; Giancarlo Mauri; Hideki Nakayama; Hideaki Hayashi (Neural Approaches to Dynamics of Signal Exchanges, 2020)

CNN-Based Prostate Zonal Segmentation on T2-Weighted MR Images: A Cross-Dataset Study. - Leonardo Rundo; Changhee Han; Jin Zhang; Ryuichiro Hataya; Yudai Nagano; Carmelo Militello; Claudio Ferretti; Marco S. Nobile; Andrea Tangherloni; Maria Carla Gilardi; Salvatore Vitabile; Hideki Nakayama; et al. (Neural Approaches to Dynamics of Signal Exchanges, 2020)

Top-k overlapping densest subgraphs: approximation algorithms and computational complexity. - Riccardo Dondi; Mohammad Mehdi Hosseinzadeh; Giancarlo Mauri; Italo Zoppis (J. Comb. Optim., 2021)

Alternative space definitions for P systems with active membranes. - Artiom Alhazov; Alberto Leporati; Luca Manzoni; Giancarlo Mauri; Claudio Zandron (J. Membr. Comput., 2021)

A framework for validating AI in precision medicine: considerations from the European ITFoC consortium. - Rosy Tsopra; Xosé M. Fernández; Claudio Luchinat; Lilia Alberghina; Hans Lehrach; Marco Vanoni; Felix Dreher 002; Osman Ugur Sezerman; Marc Cuggia; Marie de Tayrac; Edvins Miklasevics; Lucian Mihai Itu; et al. (BMC Medical Informatics Decis. Mak., 2021)

FiCoS: A fine-grained and coarse-grained GPU-powered deterministic simulator for biochemical networks. - Andrea Tangherloni; Marco S. Nobile; Paolo Cazzaniga; Giulia Capitoli; Simone Spolaor; Leonardo Rundo; Giancarlo Mauri; Daniela Besozzi (PLoS Comput. Biol., 2021)

A CUDA-powered method for the feature extraction and unsupervised analysis of medical images. - Leonardo Rundo; Andrea Tangherloni; Paolo Cazzaniga; Matteo Mistri; Simone Galimberti; Ramona Woitek; Evis Sala; Giancarlo Mauri; Marco S. Nobile (J. Supercomput., 2021)

On the complexity of approximately matching a string to a directed graph. - Riccardo Dondi; Giancarlo Mauri; Italo Zoppis (Inf. Comput., 2022)

Evaluating space measures in P systems. - Artiom Alhazov; Alberto Leporati; Luca Manzoni; Giancarlo Mauri; Claudio Zandron (J. Membr. Comput., 2022)

Preface. - Tomasz M. Gwizdalla; Luca Manzoni; Giancarlo Mauri (Nat. Comput., 2022)

Spiking neural P systems: main ideas and results. - Alberto Leporati; Giancarlo Mauri; Claudio Zandron (Nat. Comput., 2022)

Depth-two P systems can simulate Turing machines with NP oracles. - Alberto Leporati; Luca Manzoni; Giancarlo Mauri; Claudio Zandron (Theor. Comput. Sci., 2022)

Inferring P systems from their computing steps: An evolutionary approach. - Alberto Leporati; Luca Manzoni; Giancarlo Mauri; Gloria Pietropolli; Claudio Zandron (Swarm Evol. Comput., 2023)

An overview of bioinformatics courses delivered at the academic level in Italy: Reflections and recommendations from BITS. - Roberto Marangoni; Vitoantonio Bevilacqua; Mario Cannataro; Bruno Hay Mele; Giancarlo Mauri; Anna Marabotti (PLoS Comput. Biol., 2023)

Preface. - Stefania Bandini; Bastien Chopard; Giancarlo Mauri (Nat. Comput., 2024)

System DietadHoc: A Fusion of Human-Centered Design and Agile Development for the Explainability of AI Techniques Based on Clinical and Nutritional Data. - Michelangelo Sofo; Giuseppe Labianca; Giancarlo Mauri; Francesco Combierati (BIOSTEC (1), 2025)