Filling annotation gaps in yeast genomes using genome-wide contact maps. - Hervé Marie-Nelly; Martial Marbouty; Axel Cournac; Gianni Liti; Gilles Fischer; Christophe Zimmer; Romain Koszul (Bioinform., 2014)

simuG: a general-purpose genome simulator. - Jia-Xing Yue; Gianni Liti (Bioinform., 2019)

phyBWT: Alignment-Free Phylogeny via eBWT Positional Clustering. - Veronica Guerrini; Alessio Conte; Roberto Grossi; Gianni Liti; Giovanna Rosone; Lorenzo Tattini (WABI, 2022)

phyBWT2: phylogeny reconstruction via eBWT positional clustering. - Veronica Guerrini; Alessio Conte; Roberto Grossi; Gianni Liti; Giovanna Rosone; Lorenzo Tattini (Algorithms Mol. Biol., 2023)