Protein alignment HW/SW optimizations. - Gianvito Urgese; Mariagrazia Graziano; Marco Vacca; Muhammad Awais 004; Stefano Frache; Maurizio Zamboni (ICECS, 2012)

Dynamic Gap Selector: A Smith Waterman Sequence Alignment Algorithm with Affine Gap Model Optimization. - Gianvito Urgese; Giulia Paciello; Andrea Acquaviva; Elisa Ficarra; Mariagrazia Graziano; Maurizio Zamboni (IWBBIO, 2014)

miR-SEA: miRNA Seed Extension based Aligner Pipeline for NGS Expression Level Extraction. - Gianvito Urgese; Giulia Paciello; Claudio Isella; Enzo Medico; Enrico Macii; Elisa Ficarra; Andrea Acquaviva (IWBBIO, 2014)

NanoMagnet Logic: An Architectural Level Overview. - Marco Vacca; Mariagrazia Graziano; Juanchi Wang; Fabrizio Cairo; Giovanni Causapruno; Gianvito Urgese; Andrea Biroli; Maurizio Zamboni (Field-Coupled Nanocomputing, 2014)

Top-Down Profiling of Application Specific Many-core Neuromorphic Platforms. - Gianvito Urgese; Francesco Barchi; Enrico Macii (MCSoC, 2015)

Protein Alignment Systolic Array Throughput Optimization. - Giovanni Causapruno; Gianvito Urgese; Marco Vacca; Mariagrazia Graziano; Maurizio Zamboni (IEEE Trans. Very Large Scale Integr. Syst., 2015)

Toolchain integration of runtime variability and aging awareness in multicore platforms. - Ramakrishna Venkata Nittala; Francesco Barchi; Gianvito Urgese; Andrea Acquaviva (FDL, 2016)

Data and Commands Communication Protocol for Neuromorphic Platform Configuration. - Alessandro Siino; Francesco Barchi; Sergio Davies; Gianvito Urgese; Andrea Acquaviva (MCSoC, 2016)

isomiR-SEA: an RNA-Seq analysis tool for miRNAs/isomiRs expression level profiling and miRNA-mRNA interaction sites evaluation. - Gianvito Urgese; Giulia Paciello; Andrea Acquaviva; Elisa Ficarra (BMC Bioinform., 2016)

Computational Methods for Bioinformatics Analysis and Neuromorphic Computing. - Gianvito Urgese (2016)

An Efficient MPI Implementation for Multi-Coreneuromorphic Platforms. - Francesco Barchi; Gianvito Urgese; Enrico Macii; Andrea Acquaviva (NGCAS, 2017)

A Convolutional Neural Network Fully Implemented on FPGA for Embedded Platforms. - Marco Bettoni; Gianvito Urgese; Yuki Kobayashi; Enrico Macii; Andrea Acquaviva (NGCAS, 2017)

Impact of graph partitioning on SNN placement for a multi-core neuromorphic architecture: work-in-progress. - Francesco Barchi; Gianvito Urgese; Enrico Macii; Andrea Acquaviva (CASES, 2018)

Multiple alignment of packet sequences for efficient communication in a many-core neuromorphic system: work-in-progress. - Gianvito Urgese; Luca Peres; Francesco Barchi; Enrico Macii; Andrea Acquaviva (CASES, 2018)

Predicting the Oncogenic Potential of Gene Fusions Using Convolutional Neural Networks. - Marta Lovino; Gianvito Urgese; Enrico Macii; Santa Di Cataldo; Elisa Ficarra (CIBB, 2018)

Directed Graph Placement for SNN Simulation into a multi-core GALS Architecture. - Francesco Barchi; Gianvito Urgese; Andrea Acquaviva; Enrico Macii (VLSI-SoC, 2018)

Mapping Spiking Neural Networks on Multi-core Neuromorphic Platforms: Problem Formulation and Performance Analysis. - Francesco Barchi; Gianvito Urgese; Enrico Macii; Andrea Acquaviva (VLSI-SoC (Selected Papers), 2018)

A Parallel Hardware Architecture For Quantum Annealing Algorithm Acceleration. - Evelina Forno; Andrea Acquaviva; Yuki Kobayashi; Enrico Macii; Gianvito Urgese (VLSI-SoC, 2018)

Optimizing Network Traffic for Spiking Neural Network Simulations on Densely Interconnected Many-Core Neuromorphic Platforms. - Gianvito Urgese; Francesco Barchi; Enrico Macii; Andrea Acquaviva (IEEE Trans. Emerg. Top. Comput., 2018)

Code Mapping in Heterogeneous Platforms Using Deep Learning and LLVM-IR. - Francesco Barchi; Gianvito Urgese; Enrico Macii; Andrea Acquaviva (DAC, 2019)

Battery-Aware Operation Range Estimation for Terrestrial and Aerial Electric Vehicles. - Donkyu Baek; Yukai Chen; Alberto Bocca; Lorenzo Bottaccioli; Santa Di Cataldo; Valentina Gatteschi; Daniele Jahier Pagliari; Edoardo Patti; Gianvito Urgese; Naehyuck Chang; Alberto Macii; Enrico Macii; et al. (IEEE Trans. Veh. Technol., 2019)

Effective Evaluation of Clustering Algorithms on Single-Cell CNA data. - Marilisa Montemurro; Gianvito Urgese; Elena Grassi; Carmelo Gabriele Pizzino; Andrea Bertotti; Elisa Ficarra (ICBBE, 2020)

An Engineering Process model for managing a digitalised life-cycle of products in the Industry 4.0. - Gianvito Urgese; Paolo Azzoni; Jan van Deventer; Jerker Delsing; Enrico Macii (NOMS, 2020)

Unification of miRNA and isomiR research: the mirGFF3 format and the mirtop API. - Thomas Desvignes; Phillipe Loher; Karen Eilbeck; Jeffery Ma; Gianvito Urgese; Bastian Fromm; Jason Sydes; Ernesto Aparicio-Puerta; Víctor Barrera; Roderic Espín; Florian Thibord; Xavier Bofill-De Ros; et al. (Bioinform., 2020)

DEEPrior: a deep learning tool for the prioritization of gene fusions. - Marta Lovino; Maria Serena Ciaburri; Gianvito Urgese; Santa Di Cataldo; Elisa Ficarra (Bioinform., 2020)

BioSeqZip: a collapser of NGS redundant reads for the optimization of sequence analysis. - Gianvito Urgese; Emanuele Parisi; Orazio M. Scicolone; Santa Di Cataldo; Elisa Ficarra (Bioinform., 2020)

Modeling an Industrial Revolution: How to Manage Large-Scale, Complex IoT Ecosystems? - Géza Kulcsár; Pál Varga; Marek S. Tatara; Federico Montori; Michel A. Iñigo; Gianvito Urgese; Paolo Azzoni (IM, 2021)

Configuring an Embedded Neuromorphic Coprocessor Using a RISC-V Chip for Enabling Edge Computing Applications. - Evelina Forno; Andrea Spitale; Enrico Macii; Gianvito Urgese (MCSoC, 2021)

PhyliCS: a Python library to explore scCNA data and quantify spatial tumor heterogeneity. - Marilisa Montemurro; Elena Grassi; Carmelo Gabriele Pizzino; Andrea Bertotti; Elisa Ficarra; Gianvito Urgese (BMC Bioinform., 2021)

Exploration of Convolutional Neural Network models for source code classification. - Francesco Barchi; Emanuele Parisi; Gianvito Urgese; Elisa Ficarra; Andrea Acquaviva (Eng. Appl. Artif. Intell., 2021)

Optimizing Quality Inspection and Control in Powder Bed Metal Additive Manufacturing: Challenges and Research Directions. - Santa Di Cataldo; Sara Vinco; Gianvito Urgese; Flaviana Calignano; Elisa Ficarra; Alberto Macii; Enrico Macii (Proc. IEEE, 2021)

Flexible On-Line Reconfiguration of Multi-Core Neuromorphic Platforms. - Francesco Barchi; Gianvito Urgese; Alessandro Siino; Santa Di Cataldo; Enrico Macii; Andrea Acquaviva (IEEE Trans. Emerg. Top. Comput., 2021)

LaRA 2: parallel and vectorized program for sequence-structure alignment of RNA sequences. - Jörg Winkler; Gianvito Urgese; Elisa Ficarra; Knut Reinert (BMC Bioinform., 2022)

Braille Letter Reading: A Benchmark for Spatio-Temporal Pattern Recognition on Neuromorphic Hardware. - Simon F. Müller-Cleve; Vittorio Fra; Lyes Khacef; Alejandro Pequeño-Zurro; Daniel Klepatsch; Evelina Forno; Diego Gigena Ivanovich; Shavika Rastogi; Gianvito Urgese; Friedemann Zenke; Chiara Bartolozzi (CoRR, 2022)

MirGeneDB 2.1: toward a complete sampling of all major animal phyla. - Bastian Fromm; Eirik Høye; Diana Domanska; Xiangfu Zhong; Ernesto Aparicio-Puerta; Vladimir Ovchinnikov; Sinan U. Umu; Peter J. Chabot; Wenjing Kang; Morteza Aslanzadeh; Marcel Tarbier; Emilio Mármol-Sánchez; et al. (Nucleic Acids Res., 2022)

Human activity recognition: suitability of a neuromorphic approach for on-edge AIoT applications. - Vittorio Fra; Evelina Forno; Riccardo Pignari; Terrence C. Stewart; Enrico Macii; Gianvito Urgese (Neuromorph. Comput. Eng., 2022)

Review of open neuromorphic architectures and a first integration in the RISC-V PULP platform. - Michelangelo Barocci; Vittorio Fra; Enrico Macii; Gianvito Urgese (MCSoC, 2023)

First steps towards micro-benchmarking the Lava-Loihi neuromorphic ecosystem. - Walter Gallego Gomez; Andrea Pignata; Riccardo Pignari; Vittorio Fra; Enrico Macii; Gianvito Urgese (MCSoC, 2023)

Neu-BrAuER: A Neuromorphic Braille Letters Audio-Reader for Commercial Edge Devices. - Vittorio Fra; Andrea Pignata; Riccardo Pignari; Enrico Macii; Gianvito Urgese (PKDD/ECML Workshops (5), 2023)

RISC-V Processor Technologies for Aerospace Applications in the ISOLDE Project. - William Fornaciari; Federico Reghenzani; Giovanni Agosta; Davide Zoni; Andrea Galimberti; Francesco Conti 001; Yvan Tortorella; Emanuele Parisi; Francesco Barchi; Andrea Bartolini; Andrea Acquaviva; Daniele Gregori; et al. (SAMOS, 2023)

WaLiN-GUI: a graphical and auditory tool for neuron-based encoding. - Simon F. Müller-Cleve; Fernando M. Quintana; Vittorio Fra; Pedro L. Galindo; Fernando Perez-Peña; Gianvito Urgese; Chiara Bartolozzi (CoRR, 2023)

Neuromorphic Intermediate Representation: A Unified Instruction Set for Interoperable Brain-Inspired Computing. - Jens Egholm Pedersen; Steven Abreu; Matthias Jobst; Gregor Lenz; Vittorio Fra; Felix Christian Bauer; Dylan R. Muir; Peng Zhou 017; Bernhard Vogginger; Kade Heckel; Gianvito Urgese; Sadasivan Shankar; et al. (CoRR, 2023)

EGAsubmitter: A software to automate submission of nucleic acid sequencing data to the European Genome-phenome Archive. - Marco Viviani 002; Marilisa Montemurro; Livio Trusolino; Andrea Bertotti; Gianvito Urgese; Elena Grassi (Frontiers Bioinform., 2023)

Natively Neuromorphic LMU Architecture for Encoding-Free SNN-Based HAR on Commercial Edge Devices. - Vittorio Fra; Benedetto Leto; Andrea Pignata; Enrico Macii; Gianvito Urgese (ICANN (10), 2024)

An Ensemble Method for Calling and Ranking Somatic Structural Variants Using Long and Short Reads. - Walter Gallego Gomez; Elena Grassi; Andrea Bertotti; Gianvito Urgese (ICBRA, 2024)

ON-OFF Neuromorphic ISING Machines using Fowler-Nordheim Annealers. - Zihao Chen; Zhili Xiao; Mahmoud Akl; Johannes Leugering; Omowuyi Olajide; Adil Malik; Nik Dennler; Chad Harper; Subhankar Bose; Hector A. Gonzalez; Jason Eshraghian; Riccardo Pignari; et al. (CoRR, 2024)

WiN-GUI: A graphical tool for neuron-based encoding. - Simon F. Müller-Cleve; Fernando M. Quintana; Vittorio Fra; Pedro L. Galindo; Fernando Perez-Peña; Gianvito Urgese; Chiara Bartolozzi (SoftwareX, 2024)

A LIF-based Legendre Memory Unit as neuromorphic State Space Model benchmarked on a second-long spatio-temporal task. - Benedetto Leto; Gianvito Urgese; Enrico Macii; Vittorio Fra (NICE, 2025)

WiN-GUI Version 2: A graphical tool for neuron-based encoding. - Vittorio Fra; Simon F. Müller-Cleve; Gianvito Urgese; Chiara Bartolozzi (SoftwareX, 2025)

Personalized Mental State Evaluation in Human-Robot Interaction using Federated Learning. - Andrea Bussolan; Oliver Avram; Andrea Pignata; Gianvito Urgese; Stefano Baraldo; Anna Valente (CoRR, 2025)

Efficient Solution Validation of Constraint Satisfaction Problems on Neuromorphic Hardware: The Case of Sudoku Puzzles. - Riccardo Pignari; Vittorio Fra; Enrico Macii; Gianvito Urgese (IEEE Trans. Artif. Intell., 2025)