AluGene: a database of Alu elements incorporated within protein-coding genes. - Tal Dagan; Rotem Sorek; Eilon Sharon; Gil Ast; Dan Graur (Nucleic Acids Res., 2004)

The Emergence of Alternative 3′ and 5′ Splice Site Exons from Constitutive Exons. - Eli Koren; Galit Lev-Maor; Gil Ast (PLoS Comput. Biol., 2007)

TranspoGene and microTranspoGene: transposed elements influence on the transcriptome of seven vertebrates and invertebrates. - Asaf Levy; Noa Sela; Gil Ast (Nucleic Acids Res., 2008)

SROOGLE: webserver for integrative, user-friendly visualization of splicing signals. - Schraga Schwartz; Eitan Hall; Gil Ast (Nucleic Acids Res., 2009)

Alu Exonization Events Reveal Features Required for Precise Recognition of Exons by the Splicing Machinery. - Schraga Schwartz; Nurit Gal-Mark; Nir Kfir; Ram Oren; Eddo Kim; Gil Ast (PLoS Comput. Biol., 2009)

A network-based method for associating genes with autism spectrum disorder. - Neta Zadok; Gil Ast; Roded Sharan (Frontiers Bioinform., 2024)