A permissive secondary structure-guided superposition tool for clustering of protein fragments toward protein structure prediction via fragment assembly. - Gilad Wainreb; Nurit Haspel; Haim J. Wolfson; Ruth Nussinov (Bioinform., 2006)

MuD: an interactive web server for the prediction of non-neutral substitutions using protein structural data. - Gilad Wainreb; Haim Ashkenazy; Yana Bromberg; Alina Starovolsky-Shitrit; Turkan Haliloglu; Eytan Ruppin; Karen B. Avraham; Burkhard Rost; Nir Ben-Tal (Nucleic Acids Res., 2010)

Protein stability: a single recorded mutation aids in predicting the effects of other mutations in the same amino acid site. - Gilad Wainreb; Lior Wolf; Haim Ashkenazy; Yves Dehouck; Nir Ben-Tal (Bioinform., 2011)