Assessments of intra- and inter-host diversity of hepatitis C virus using Next Generation Sequencing and Mass spectrometry. - Zoya Dimitrova; David S. Campo; Sumathi Ramachandran; Gilberto Vaughan; Lilia Ganova-Raeva; Yulin Lin; Joseph C. Forbi; Guo-liang Xia; Pavel Skums; Brian L. Pearlman; Yuri Khudyakov (BIBM Workshops, 2011)

Host-specific HCV evolution and response to the combined interferon and ribavirin therapy. - James Lara; John E. Tavis; Maureen J. Donlin; William M. Lee; He-Jun Yuan; Brian L. Pearlman; Gilberto Vaughan; Joseph C. Forbi; Guo-liang Xia; Yuri Khudyakov (BIBM Workshops, 2011)

Modelling differential interferon resistance of HCV quasispecies. - Pavel Skums; David S. Campo; Zoya Dimitrova; Gilberto Vaughan; Daryl T. Lau; Yuri Khudyakov (BIBM Workshops, 2011)

Efficient error correction for next-generation sequencing of viral amplicons. - Pavel Skums; Zoya Dimitrova; David S. Campo; Gilberto Vaughan; Livia Rossi; Joseph C. Forbi; Jonny Yokosawa; Alex Zelikovsky; Yuri Khudyakov (BMC Bioinform., 2012)

Evaluation of viral heterogeneity using next-generation sequencing, end-point limiting-dilution and mass spectrometry. - Zoya Dimitrova; David S. Campo; Sumathi Ramachandran; Gilberto Vaughan; Lilia Ganova-Raeva; Yulin Lin; Joseph C. Forbi; Guo-liang Xia; Pavel Skums; Brian L. Pearlman; Yuri Khudyakov (Silico Biol., 2012)

Coordinated evolution among hepatitis C virus genomic sites is coupled to host factors and resistance to interferon. - James Lara; John E. Tavis; Maureen J. Donlin; William M. Lee; He-Jun Yuan; Brian L. Pearlman; Gilberto Vaughan; Joseph C. Forbi; Guo-liang Xia; Yuri Khudyakov (Silico Biol., 2012)

Numerical detection, measuring and analysis of differential interferon resistance for individual HCV intra-host variants and its influence on the therapy response. - Pavel Skums; David S. Campo; Zoya Dimitrova; Gilberto Vaughan; Daryl T. Lau; Yuri Khudyakov (Silico Biol., 2012)

Highlights: Predicting the cross-immunoreactivity of hepatitis C virus hyper-variable region 1 peptides using polynomial neural networks. - James Lara; Yury Khudyakov; Livia Rossi; Gilberto Vaughan (ICCABS, 2015)

Optimization of SNP Search Based on Masks Using Graphics Processing Unit. - Álvaro Magri Nogueira da Cruz; Vitoria Zanon Gomes; Matheus Carreira Andrade; Anderson Rici Amorim; Carlos Roberto Valêncio; Gilberto Vaughan; Geraldo Francisco Donegá Zafalon (ICEIS (2), 2023)