Caractérisation des N-écritures et application à l'étude des suites de complexité ultimement n+cste. - Gilles Didier (Theor. Comput. Sci., 1999)

GeneANOVA-gene expression analysis of variance. - Gilles Didier; Pierre Brézellec; Elisabeth Remy; Alain Hénaut (Bioinform., 2002)

Common Intervals of Two Sequences. - Gilles Didier (WABI, 2003)

The operons, a criterion to compare the reliability of transcriptome analysis tools: ICA is more reliable than ANOVA, PLS and PCA. - Anne-Sophie Carpentier; Alessandra Riva; Pierre Tisseur; Gilles Didier; Alain Hénaut (Comput. Biol. Chem., 2004)

Local Decoding of Sequences and Alignment-Free Comparison. - Gilles Didier; Ivan Laprevotte; Maude Pupin; Alain Hénaut (J. Comput. Biol., 2006)

Coding with variable block maps. - Vicente Acuña; Gilles Didier; Alejandro Maass (Theor. Comput. Sci., 2006)

Mapping sequences by parts. - Gilles Didier; Carito Guziolowski (Algorithms Mol. Biol., 2007)

Comparing sequences without using alignments: application to HIV/SIV subtyping. - Gilles Didier; Laurent Debomy; Maude Pupin; Ming Zhang; Alexander Grossmann; Claudine Devauchelle; Ivan Laprevotte (BMC Bioinform., 2007)

Character sets of strings. - Gilles Didier; Thomas Schmidt 001; Jens Stoye; Dekel Tsur (J. Discrete Algorithms, 2007)

MS4 - Multi-Scale Selector of Sequence Signatures: An alignment-free method for classification of biological sequences. - Eduardo Corel; Florian Pitschi; Ivan Laprevotte; Gilles Grasseau; Gilles Didier; Claudine Devauchelle (BMC Bioinform., 2010)

Relations between gene regulatory networks and cell dynamics in Boolean models. - Gilles Didier; Elisabeth Remy (Discret. Appl. Math., 2012)

Variable length local decoding and alignment-free sequence comparison. - Gilles Didier; Eduardo Corel; Ivan Laprevotte; Alexander Grossmann; Claudine Landès-Devauchelle (Theor. Comput. Sci., 2012)

Designing optimal- and fast-on-average pattern matching algorithms. - Gilles Didier; Laurent Tichit (J. Discrete Algorithms, 2017)

Identifying communities from multiplex biological networks by randomized optimization of modularity. - Gilles Didier; Alberto Valdeolivas; Anaïs Baudot (F1000Research, 2018)

Optimal pattern matching algorithms. - Gilles Didier (J. Complex., 2019)