Automat and BLAST: comparison of two protein sequence similarity search programs. - Hubert Cantalloube; Gilles Labesse; Jacques Chomilier; Carole E. Nahum; Y. Y. Cho; V. Chams; A. Achour; A. Lachgar; J. P. Mbika; W. Issing (Comput. Appl. Biosci., 1995)

MulBlast 1.0: a multiple alignment of BLAST output to boost protein sequence similarity analysis. - Gilles Labesse (Comput. Appl. Biosci., 1996)

P-SEA: a new efficient assignment of secondary structure from C alpha trace of proteins. - Gilles Labesse; N. Colloc'h; Joël Pothier; J. P. Mornon (Comput. Appl. Biosci., 1997)

Incremental threading optimization (TITO) to help alignment and modelling of remote homologues. - Gilles Labesse; J. P. Mornon (Bioinform., 1998)

Easier threading through web-based comparisons and cross-validations. - Dominique Douguet; Gilles Labesse (Bioinform., 2001)

ViTO: tool for refinement of protein sequence-structure alignments. - Vincent Catherinot; Gilles Labesse (Bioinform., 2004)

kinDOCK: a tool for comparative docking of protein kinase ligands. - Laetitia Martin; Vincent Catherinot; Gilles Labesse (Nucleic Acids Res., 2006)

@TOME-2: a new pipeline for comparative modeling of protein-ligand complexes. - Jean-Luc Pons; Gilles Labesse (Nucleic Acids Res., 2009)

Towards accurate high-throughput ligand affinity prediction by exploiting structural ensembles, docking metrics and ligand similarity. - Melanie Schneider; Jean-Luc Pons; William Bourguet; Gilles Labesse (Bioinform., 2020)

Proteo3Dnet: a web server for the integration of structural information with interactomics data. - Guillaume Postic; Jessica Andreani; Julien Marcoux; Victor Reys; Raphaël Guérois; Julien Rey; Emmanuelle Mouton-Barbosa; Yves Vandenbrouck; Sarah Cianférani; Odile Burlet-Schiltz; Gilles Labesse; Pierre Tufféry (Nucleic Acids Res., 2021)