Construction of Phylogenetic Trees on Parallel Clusters. - Frédéric Guinand; Gilles Parmentier; Denis Trystram (PPAM, 2001)

Scheduling Precedence Task Graphs with Disturbances. - Apurv Gupta; Gilles Parmentier; Denis Trystram (RAIRO Oper. Res., 2003)

Cache-Based Parallelization of Multiple Sequence Alignment Problem. - Gilles Parmentier; Denis Trystram; Jaroslaw Zola (Euro-Par, 2004)

Large scale multiple sequence alignment with simultaneous phylogeny inference. - Gilles Parmentier; Denis Trystram; Jaroslaw Zola (J. Parallel Distributed Comput., 2006)

Bgee: Integrating and Comparing Heterogeneous Transcriptome Data Among Species. - Frederic B. Bastian; Gilles Parmentier; Julien Roux; Sébastien Moretti; Vincent Laudet; Marc Robinson-Rechavi (DILS, 2008)

Homolonto: generating homology relationships by pairwise alignment of ontologies and application to vertebrate anatomy. - Gilles Parmentier; Frederic B. Bastian; Marc Robinson-Rechavi (Bioinform., 2010)

vHOG, a multispecies vertebrate ontology of homologous organs groups. - Anne Niknejad; Aurélie Comte; Gilles Parmentier; Julien Roux; Frederic B. Bastian; Marc Robinson-Rechavi (Bioinform., 2012)

The Bgee suite: integrated curated expression atlas and comparative transcriptomics in animals. - Frederic B. Bastian; Julien Roux; Anne Niknejad; Aurélie Comte; Sara S. Fonseca Costa; Tarcisio Mendes de Farias; Sébastien Moretti; Gilles Parmentier; Valentine Rech de Laval; Marta Rosikiewicz; Julien Wollbrett; Amina Echchiki; et al. (Nucleic Acids Res., 2021)