Reconstructing the Evolutionary History of Complex Human Gene Clusters. - Yu Zhang 002; Giltae Song; Tomás Vinar; Eric D. Green; Adam C. Siepel; Webb Miller (RECOMB, 2008)

Simultaneous History Reconstruction for Complex Gene Clusters in Multiple Species. - Yu Zhang 002; Giltae Song; Chih-Hao Hsu; Webb Miller (Pacific Symposium on Biocomputing, 2009)

Inferring the Recent Duplication History of a Gene Cluster. - Giltae Song; Louxin Zhang; Tomás Vinar; Webb Miller (RECOMB-CG, 2009)

Bayesian History Reconstruction of Complex Human Gene Clusters on a Phylogeny - Tomás Vinar; Brona Brejová; Giltae Song; Adam C. Siepel (CoRR, 2009)

Evolutionary History Reconstruction for Mammalian Complex Gene Clusters. - Yu Zhang 002; Giltae Song; Tomás Vinar; Eric D. Green; Adam C. Siepel; Webb Miller (J. Comput. Biol., 2009)

CAGE: Combinatorial Analysis of Gene-Cluster Evolution. - Giltae Song; Louxin Zhang; Tomás Vinar; Webb Miller (J. Comput. Biol., 2010)

Reconstructing Histories of Complex Gene Clusters on a Phylogeny. - Tomás Vinar; Brona Brejová; Giltae Song; Adam C. Siepel (J. Comput. Biol., 2010)

Evaluation of methods for detecting conversion events in gene clusters. - Giltae Song; Chih-Hao Hsu; Cathy Riemer; Webb Miller (BMC Bioinform., 2011)

From one to many: expanding the Saccharomyces cerevisiae reference genome panel. - Stacia R. Engel; Shuai Weng; Gail Binkley; Kelley M. Paskov; Giltae Song; J. Michael Cherry (Database J. Biol. Databases Curation, 2016)

Integration of new alternative reference strain genome sequences into the Saccharomyces genome database. - Giltae Song; Rama Balakrishnan; Gail Binkley; Maria C. Costanzo; Kyla S. Dalusag; Janos Demeter; Stacia R. Engel; Sage T. Hellerstedt; Kalpana Karra; Benjamin C. Hitz; Robert S. Nash; Kelley M. Paskov; et al. (Database J. Biol. Databases Curation, 2016)

The Saccharomyces Genome Database Variant Viewer. - Travis K. Sheppard; Benjamin C. Hitz; Stacia R. Engel; Giltae Song; Rama Balakrishnan; Gail Binkley; Maria C. Costanzo; Kyla S. Dalusag; Janos Demeter; Sage T. Hellerstedt; Kalpana Karra; Robert S. Nash; et al. (Nucleic Acids Res., 2016)

DISPAQ: Distributed Profitable-Area Query from Big Taxi Trip Data. - Fadhilah Kurnia Putri; Giltae Song; Joonho Kwon; Praveen Rao 001 (Sensors, 2017)

Privacy-Preserving Compressed Reference-Oriented Alignment Map Using Decentralized Storage. - Doo-Hee Hwang; SeokHwan Choi; Jin-Myeong Shin; Giltae Song; Yoon-Ho Choi (IEEE Access, 2018)

DNN-Boost: Somatic mutation identification of tumor-only whole-exome sequencing data using deep neural network and XGBoost. - Firda Aminy Maruf; Rian Pratama; Giltae Song (J. Bioinform. Comput. Biol., 2021)

Aptamer- Protein Interaction Prediction using Transformer. - Incheol Shin; Giltae Song (BigComp, 2022)

FastqCLS: a FASTQ compressor for long-read sequencing via read reordering using a novel scoring model. - Dohyeon Lee; Giltae Song (Bioinform., 2022)

One year mortality prediction in heart failure using feature selection and missing value imputation in deep learning. - Taehyun Kim; Minwook Kim; Hyewon Lee; Giltae Song (BigComp, 2023)

Revisiting Self-Training with Regularized Pseudo-Labeling for Tabular Data. - Minwook Kim; Juseong Kim; José Bento 001; Giltae Song (CoRR, 2023)

CAST: Cluster-Aware Self-Training for Tabular Data. - Minwook Kim; Juseong Kim; Kibeom Kim; Donggil Kang; Giltae Song (CoRR, 2023)

DeepFold: enhancing protein structure prediction through optimized loss functions, improved template features, and re-optimized energy function. - Jae-Won Lee; Jong-Hyun Won; Seonggwang Jeon; Yujin Choo; Yubin Yeon; Jin-Seon Oh; Minsoo Kim; Seonhwa Kim; InSuk Joung; Cheongjae Jang; Sung Jong Lee; Tae Hyun Kim; et al. (Bioinform., 2023)

AptaTrans: a deep neural network for predicting aptamer-protein interaction using pretrained encoders. - Incheol Shin; Keumseok Kang; Juseong Kim; Sanghun Sel; Jeonghoon Choi; Jae-Wook Lee; Ho-Young Kang; Giltae Song (BMC Bioinform., 2023)

Therapeutic gene target prediction using novel deep hypergraph representation learning. - Kibeom Kim; Juseong Kim; Minwook Kim; Hyewon Lee; Giltae Song (Briefings Bioinform., 2024)

Acute myocardial infarction prognosis prediction with reliable and interpretable artificial intelligence system. - Minwook Kim; Donggil Kang; Min Sun Kim; Jeong Cheon Choe; Sun-Hack Lee; Jin-Hee Ahn; Jun-Hyok Oh; Jung Hyun Choi; Han Cheol Lee; Kwang Soo Cha; Kyungtae Jang; Woor I Bong; et al. (J. Am. Medical Informatics Assoc., 2024)

Predicting Protein-Ligand binding Residue with Token classification. - Keumseok Kang; Sanghun Sel; Jeongmu Kim; Giltae Song (BigComp, 2025)

SNP Position Filtering and Multimodal Approach in Heart Failure Risk Prediction. - Seungyun Shin; Subin Lee; Kibeom Kim; Hyewon Lee; Giltae Song (BigComp, 2025)