Readjoiner: a fast and memory efficient string graph-based sequence assembler. - Giorgio Gonnella; Stefan Kurtz (BMC Bioinform., 2012)

GfaPy: a flexible and extensible software library for handling sequence graphs in Python. - Giorgio Gonnella; Stefan Kurtz (Bioinform., 2017)

GfaViz: flexible and interactive visualization of GFA sequence graphs. - Giorgio Gonnella; Niklas Niehus; Stefan Kurtz (Bioinform., 2019)

Fastsubtrees: simple and efficient subtrees extractions in Python with applications to NCBI taxonomy. - Aman Modi; Giorgio Gonnella (J. Open Source Softw., 2022)

Designing text representations for existing data using the TextFormats Specification Language. - Giorgio Gonnella (CoRR, 2023)