CLEANUP: a fast computer program for removing redundancies from nucleotide sequence databases. - Giorgio Grillo; Marcella Attimonelli; Sabino Liuni; Graziano Pesole (Comput. Appl. Biosci., 1996)

Databases of MRNA Untranslated Regions for Metazoa. - Graziano Pesole; Giorgio Grillo; Sabino Liuni (Comput. Chem., 1996)

UTRdb: a specialized database of 5'- and 3'-untranslated regions of eukaryotic mRNAs. - Graziano Pesole; Sabino Liuni; Giorgio Grillo; Cecilia Saccone (Nucleic Acids Res., 1998)

UTRdb: a specialized database of 5' and 3' untranslated regions of eukaryotic mRNAs. - Graziano Pesole; Sabino Liuni; Giorgio Grillo; Matilde Ippedico; Alessandra Larizza; Wojciech Makalowski; Cecilia Saccone (Nucleic Acids Res., 1999)

The Untranslated Regions of Eukaryotic MRNAs: Structure, Function, Evolution and Bioinformatic Tools for Their Analysis. - Graziano Pesole; Giorgio Grillo; Alessandra Larizza; Sabino Liuni (Briefings Bioinform., 2000)

MitoNuc and MitoAln: two related databases of nuclear genes coding for mitochondrial proteins. - Graziano Pesole; Carmela Gissi; Domenico Catalano; Giorgio Grillo; Flavio Licciulli; Sabino Liuni; Marcella Attimonelli; Cecilia Saccone (Nucleic Acids Res., 2000)

UTRdb and UTRsite: specialized databases of sequences and functional elements of 5' and 3' untranslated regions of eukaryotic mRNAs. - Graziano Pesole; Sabino Liuni; Giorgio Grillo; Flavio Licciulli; Alessandra Larizza; Wojciech Makalowski; Cecilia Saccone (Nucleic Acids Res., 2000)

MitoNuc: a database of nuclear genes coding for mitochondrial proteins. Update 2002. - Marcella Attimonelli; Domenico Catalano; Carmela Gissi; Giorgio Grillo; Flavio Licciulli; Sabino Liuni; Monica Santamaria; Graziano Pesole; Cecilia Saccone (Nucleic Acids Res., 2002)

UTRdb and UTRsite: specialized databases of sequences and functional elements of 5' and 3' untranslated regions of eukaryotic mRNAs. Update 2002. - Graziano Pesole; Sabino Liuni; Giorgio Grillo; Flavio Licciulli; Flavio Mignone; Carmela Gissi; Cecilia Saccone (Nucleic Acids Res., 2002)

PatSearch: a program for the detection of patterns and structural motifs in nucleotide sequences. - Giorgio Grillo; Flavio Licciulli; Sabino Liuni; Elisabetta Sbisà; Graziano Pesole (Nucleic Acids Res., 2003)

DNAfan: a software tool for automated extraction and analysis of user-defined sequence regions. - Andreas Gisel; Maria Panetta; Giorgio Grillo; Flavio Licciulli; Sabino Liuni; Cecilia Saccone; Graziano Pesole (Bioinform., 2004)

CSTminer: a web tool for the identification of coding and noncoding conserved sequence tags through cross-species genome comparison. - Tiziana Castrignanò; Alessandro Canali; Giorgio Grillo; Sabino Liuni; Flavio Mignone; Graziano Pesole (Nucleic Acids Res., 2004)

UTRdb and UTRsite: a collection of sequences and regulatory motifs of the untranslated regions of eukaryotic mRNAs. - Flavio Mignone; Giorgio Grillo; Flavio Licciulli; Michele Iacono; Sabino Liuni; Paul J. Kersey; Jorge Duarte; Cecilia Saccone; Graziano Pesole (Nucleic Acids Res., 2005)

GenoMiner: a tool for genome-wide search of coding and non-coding conserved sequence tags. - Tiziana Castrignanò; Paolo D'Onorio De Meo; Giorgio Grillo; Sabino Liuni; Flavio Mignone; Ivano Giuseppe Talamo; Graziano Pesole (Bioinform., 2006)

MitoRes: a resource of nuclear-encoded mitochondrial genes and their products in Metazoa. - Domenico Catalano; Flavio Licciulli; Antonio Turi; Giorgio Grillo; Cecilia Saccone; Domenica D'Elia (BMC Bioinform., 2006)

p53FamTaG: a database resource of human p53, p63 and p73 direct target genes combining in silico prediction and microarray data. - Elisabetta Sbisà; Domenico Catalano; Giorgio Grillo; Flavio Licciulli; Antonio Turi; Sabino Liuni; Graziano Pesole; Anna De Grassi; Mariano Francesco Caratozzolo; Anna Maria D'Erchia; Beatriz Navarro; Apollonia Tullo; et al. (BMC Bioinform., 2007)

A high performance grid-web service framework for the identification of 'conserved sequence tags'. - Paolo D'Onorio De Meo; Danilo Carrabino; Nico Sanna; Tiziana Castrignanò; Giorgio Grillo; Flavio Licciulli; Sabino Liuni; Matteo Re; Flavio Mignone; Graziano Pesole (Future Gener. Comput. Syst., 2007)

Mining Frequent Patterns of Biological Spaced Motifs. - Corrado Loglisci; Eliana Salvemini; Antonio Turi; Giorgio Grillo; Donato Malerba; Domenica D'Elia (SEBD, 2009)

Computational annotation of UTR cis-regulatory modules through Frequent Pattern Mining. - Antonio Turi; Corrado Loglisci; Eliana Salvemini; Giorgio Grillo; Donato Malerba; Domenica D'Elia (BMC Bioinform., 2009)

UTRdb and UTRsite (RELEASE 2010): a collection of sequences and regulatory motifs of the untranslated regions of eukaryotic mRNAs. - Giorgio Grillo; Antonio Turi; Flavio Licciulli; Flavio Mignone; Sabino Liuni; Sandro Banfi; Vincenzo Alessandro Gennarino; David Stephen Horner; Giulio Pavesi; Ernesto Picardi; Graziano Pesole (Nucleic Acids Res., 2010)

Reference databases for taxonomic assignment in metagenomics. - Monica Santamaria; Bruno Fosso; Arianna Consiglio; Giorgio De Caro; Giorgio Grillo; Flavio Licciulli; Sabino Liuni; Marinella Marzano; Daniel Alonso-Alemany; Gabriel Valiente; Graziano Pesole (Briefings Bioinform., 2012)

BEAT: Bioinformatics Exon Array Tool to store, analyze and visualize Affymetrix GeneChip Human Exon Array data from disease experiments. - Arianna Consiglio; Massimo Carella; Giorgio De Caro; Gianfranco Delle Foglie; Candida Giovannelli; Giorgio Grillo; Massimo Ianigro; Flavio Licciulli; Orazio Palumbo; Ada Piepoli; Elena Ranieri; Sabino Liuni (BMC Bioinform., 2012)

GIDL: a rule based expert system for GenBank Intelligent Data Loading into the Molecular Biodiversity database. - Paolo Pannarale; Domenico Catalano; Giorgio De Caro; Giorgio Grillo; Pietro Leo; Graziano Pappadà; Francesco Rubino; Gaetano Scioscia; Flavio Licciulli (BMC Bioinform., 2012)

Managing NGS Differential Expression Uncertainty with Fuzzy Sets. - Arianna Consiglio; Corrado Mencar; Giorgio Grillo; Sabino Liuni (CIBB, 2015)

A fuzzy method for RNA-Seq differential expression analysis in presence of multireads. - Arianna Consiglio; Corrado Mencar; Giorgio Grillo; Flaviana Marzano; Mariano Francesco Caratozzolo; Sabino Liuni (BMC Bioinform., 2016)

WoPPER: Web server for Position Related data analysis of gene Expression in Prokaryotes. - Simone Puccio; Giorgio Grillo; Flavio Licciulli; Marco Severgnini; Sabino Liuni; Silvio Bicciato; Gianluca De Bellis; Francesco Ferrari; Clelia Peano (Nucleic Acids Res., 2017)

ITSoneDB: a comprehensive collection of eukaryotic ribosomal RNA Internal Transcribed Spacer 1 (ITS1) sequences. - Monica Santamaria; Bruno Fosso; Flavio Licciulli; Bachir Balech; Ilaria Larini; Giorgio Grillo; Giorgio De Caro; Sabino Liuni; Graziano Pesole (Nucleic Acids Res., 2018)

InteractomeSeq: a web server for the identification and profiling of domains and epitopes from phage display and next generation sequencing data. - Simone Puccio; Giorgio Grillo; Arianna Consiglio; Maria Felicia Soluri; Daniele Sblattero; Diego Cotella; Claudio Santoro; Sabino Liuni; Gianluca De Bellis; Enrico Lugli; Clelia Peano; Flavio Licciulli (Nucleic Acids Res., 2020)

ITSoneWB: profiling global taxonomic diversity of eukaryotic communities on Galaxy. - Marco Antonio Tangaro; Giuseppe Defazio; Bruno Fosso; Vito Flavio Licciulli; Giorgio Grillo; Giacinto Donvito; Enrico Lavezzo; Giacomo Baruzzo; Graziano Pesole; Monica Santamaria (Bioinform., 2021)