The MoVIN server for the analysis of protein interaction networks. - Paolo Marcatili; Giovanni Bussotti; Anna Tramontano (BMC Bioinform., 2008)

Using tertiary structure for the computation of highly accurate multiple RNA alignments with the SARA-Coffee package. - Carsten Kemena; Giovanni Bussotti; Emidio Capriotti; Marc A. Martí-Renom; Cédric Notredame (Bioinform., 2013)

SARA-Coffee web server, a tool for the computation of RNA sequence and structure multiple alignments. - Paolo Di Tommaso; Giovanni Bussotti; Carsten Kemena; Emidio Capriotti; Maria Chatzou; Pablo Prieto; Cédric Notredame (Nucleic Acids Res., 2014)

Multiple sequence alignment modeling: methods and applications. - Maria Chatzou; Cedrik Magis; Jia-Ming Chang; Carsten Kemena; Giovanni Bussotti; Ionas Erb; Cédric Notredame (Briefings Bioinform., 2016)