Radix Sort on the Hypercube. - Giovanni Manzini (Inf. Process. Lett., 1991)

Searching graphs using mixed strategies. - Giovanni Manzini (J. Exp. Theor. Artif. Intell., 1991)

Large Sorting and Routing Problems on the Hypercube and Related Networks. - Giovanni Manzini (Parallel Process. Lett., 1991)

Global Strategies for Augmenting the Efficiency of TSP Heuristics. - Bruno Codenotti; Giovanni Manzini; Luciano Margara; Giovanni Resta (WADS, 1993)

Sparse Matrix Vector Multiplication on Distributed Architectures: Lower Bounds and Average Complexity Results. - Giovanni Manzini (Inf. Process. Lett., 1994)

sparse Matrix Computations on the Hypercube and Related Networks. - Giovanni Manzini (J. Parallel Distributed Comput., 1994)

BIDA: An Improved Perimeter Search Algorithm. - Giovanni Manzini (Artif. Intell., 1995)

Algebraic Techniques in Communication Complexity. - Bruno Codenotti; Giovanni Manzini; Luciano Margara (Inf. Process. Lett., 1995)

Lyapunov Exponents Vs Expansivity and Sensitivity in Cellular Automata. - Michele Finelli; Giovanni Manzini; Luciano Margara (ACRI, 1996)

Parallel Complexity of Householder QR Factorization. - Mauro Leoncini; Giovanni Manzini; Luciano Margara (ESA, 1996)

Perturbation: An Efficient Technique for the Solution of Very Large Instances of the Euclidean TSP. - Bruno Codenotti; Giovanni Manzini; Luciano Margara; Giovanni Resta (INFORMS J. Comput., 1996)

On the Ordering of Sparse Linear Systems. - Giovanni Manzini (Theor. Comput. Sci., 1996)

A Complete and Efficiently Computable Topological Classification of D-dimensional Linear Cellular Automata over Zm. - Giovanni Manzini; Luciano Margara (ICALP, 1997)

On the Parallel Complexity of Matrix Factorization Algorithms. - Mauro Leoncini; Giovanni Manzini; Luciano Margara (SPAA, 1997)

On Ergodic Linear Cellular Automata over Zm. - Gianpiero Cattaneo; Enrico Formenti; Giovanni Manzini; Luciano Margara (STACS, 1997)

On the Randomized Error of Polynomial Methods for Eigenvector and Eigenvalue Estimates. - Gianna M. Del Corso; Giovanni Manzini (J. Complex., 1997)

Characterization of Sensitive Linear Cellular Automata with Respect to the Counting Distance. - Giovanni Manzini (MFCS, 1998)

Attractors of D-dimensional Linear Cellular Automata. - Giovanni Manzini; Luciano Margara (STACS, 1998)

Lower bounds for sparse matrix vector multiplication on hypercubic networks. - Giovanni Manzini (Discret. Math. Theor. Comput. Sci., 1998)

Lyapunov Exponents versus Expansivity and Sensitivity in Cellular Automata. - Michele Finelli; Giovanni Manzini; Luciano Margara (J. Complex., 1998)

Invertible Linear Cellular Automata over Zm: Algorithmic and Dynamical Aspects. - Giovanni Manzini; Luciano Margara (J. Comput. Syst. Sci., 1998)

Efficient Algorithms foe On-Line Symbol Ranking Compression. - Giovanni Manzini (ESA, 1999)

Invited Lecture: The Burrows-Wheeler Transform: Theory and Practice. - Giovanni Manzini (MFCS, 1999)

Finding Exact Solutions to the Bandwidth Minimization Problem. - Gianna M. Del Corso; Giovanni Manzini (Computing, 1999)

Attractors of Linear Cellular Automata. - Giovanni Manzini; Luciano Margara (J. Comput. Syst. Sci., 1999)

Compression of Low Entropy Strings with Lempel-Ziv Algorithms. - S. Rao Kosaraju; Giovanni Manzini (SIAM J. Comput., 1999)

Parallel Complexity of Numerically Accurate Linear System Solvers. - Mauro Leoncini; Giovanni Manzini; Luciano Margara (SIAM J. Comput., 1999)

A Complete and Efficiently Computable Topological Classification of D-dimensional Linear Cellular Automata over Zm. - Giovanni Manzini; Luciano Margara (Theor. Comput. Sci., 1999)

Opportunistic Data Structures with Applications. - Paolo Ferragina; Giovanni Manzini (FOCS, 2000)

Ergodicity, transitivity, and regularity for linear cellular automata over Zm. - Gianpiero Cattaneo; Enrico Formenti; Giovanni Manzini; Luciano Margara (Theor. Comput. Sci., 2000)

An experimental study of an opportunistic index. - Paolo Ferragina; Giovanni Manzini (SODA, 2001)

An experimental study of a compressed index. - Paolo Ferragina; Giovanni Manzini (Inf. Sci., 2001)

An analysis of the Burrows-Wheeler transform. - Giovanni Manzini (J. ACM, 2001)

Inversion of circulant matrices over Zm. - Dario Bini; Gianna M. Del Corso; Giovanni Manzini; Luciano Margara (Math. Comput., 2001)

On computing the entropy of cellular automata. - Michele d'Amico; Giovanni Manzini; Luciano Margara (Theor. Comput. Sci., 2003)

Compression boosting in optimal linear time using the Burrows-Wheeler Transform. - Paolo Ferragina; Giovanni Manzini (SODA, 2004)

An Alphabet-Friendly FM-Index. - Paolo Ferragina; Giovanni Manzini; Veli Mäkinen; Gonzalo Navarro 001 (SPIRE, 2004)

Two Space Saving Tricks for Linear Time LCP Array Computation. - Giovanni Manzini (SWAT, 2004)

Engineering a Lightweight Suffix Array Construction Algorithm. - Giovanni Manzini; Paolo Ferragina (Algorithmica, 2004)

A simple and fast DNA compressor. - Giovanni Manzini; Marcella Rastero (Softw. Pract. Exp., 2004)

Structuring labeled trees for optimal succinctness, and beyond. - Paolo Ferragina; Fabrizio Luccio; Giovanni Manzini; S. Muthukrishnan 001 (FOCS, 2005)

Boosting textual compression in optimal linear time. - Paolo Ferragina; Raffaele Giancarlo; Giovanni Manzini; Marinella Sciortino (J. ACM, 2005)

Indexing compressed text. - Paolo Ferragina; Giovanni Manzini (J. ACM, 2005)

The Engineering of a Compression Boosting Library: Theory vs Practice in BWT Compression. - Paolo Ferragina; Raffaele Giancarlo; Giovanni Manzini (ESA, 2006)

Compressing and searching XML data via two zips. - Paolo Ferragina; Fabrizio Luccio; Giovanni Manzini; S. Muthukrishnan 001 (WWW, 2006)

Space-Conscious Compression. - Travis Gagie; Giovanni Manzini (MFCS, 2007)

Compression-based classification of biological sequences and structures via the Universal Similarity Metric: experimental assessment. - Paolo Ferragina; Raffaele Giancarlo; Valentina Greco; Giovanni Manzini; Gabriel Valiente (BMC Bioinform., 2007)

Compressed representations of sequences and full-text indexes. - Paolo Ferragina; Giovanni Manzini; Veli Mäkinen; Gonzalo Navarro 001 (ACM Trans. Algorithms, 2007)

Foreword. - Paolo Ferragina; Giovanni Manzini; S. Muthukrishnan 001 (Theor. Comput. Sci., 2007)

Boosting Textual Compression. - Paolo Ferragina; Giovanni Manzini (Encyclopedia of Algorithms, 2008)

Burrows-Wheeler Transform. - Paolo Ferragina; Giovanni Manzini (Encyclopedia of Algorithms, 2008)

Dictionary-Based Data Compression. - Travis Gagie; Giovanni Manzini (Encyclopedia of Algorithms, 2008)

Permuted Longest-Common-Prefix Array. - Juha Kärkkäinen; Giovanni Manzini; Simon J. Puglisi (CPM, 2009)

Succinct Representations of Trees. - Giovanni Manzini (IWOCA, 2009)

The myriad virtues of Wavelet Trees. - Paolo Ferragina; Raffaele Giancarlo; Giovanni Manzini (Inf. Comput., 2009)

Compressing and indexing labeled trees, with applications. - Paolo Ferragina; Fabrizio Luccio; Giovanni Manzini; S. Muthukrishnan 001 (J. ACM, 2009)

On compressing the textual web. - Paolo Ferragina; Giovanni Manzini (WSDM, 2010)

Move-to-Front, Distance Coding, and Inversion Frequencies revisited. - Travis Gagie; Giovanni Manzini (Theor. Comput. Sci., 2010)

Spaced Seeds Design Using Perfect Rulers. - Lavinia Egidi; Giovanni Manzini (SPIRE, 2011)

Lightweight Data Indexing and Compression in External Memory. - Paolo Ferragina; Travis Gagie; Giovanni Manzini (Algorithmica, 2012)

Better spaced seeds using Quadratic Residues. - Lavinia Egidi; Giovanni Manzini (J. Comput. Syst. Sci., 2013)

Foreword. - Raffaele Giancarlo; Giovanni Manzini (Theor. Comput. Sci., 2013)

Relative FM-Indexes. - Djamal Belazzougui; Travis Gagie; Simon Gog; Giovanni Manzini; Jouni Sirén (SPIRE, 2014)

Reusing an FM-index. - Travis Gagie; Giovanni Manzini; Jouni Sirén (CoRR, 2014)

Spaced Seed Design Using Perfect Rulers. - Lavinia Egidi; Giovanni Manzini (Fundam. Informaticae, 2014)

Design and analysis of periodic multiple seeds. - Lavinia Egidi; Giovanni Manzini (Theor. Comput. Sci., 2014)

Relative Select. - Christina Boucher 001; Alexander Bowe; Travis Gagie; Giovanni Manzini; Jouni Sirén (SPIRE, 2015)

Longest Common Prefix with Mismatches. - Giovanni Manzini (SPIRE, 2015)

Multiple seeds sensitivity using a single seed with threshold. - Lavinia Egidi; Giovanni Manzini (J. Bioinform. Comput. Biol., 2015)

Efficient and Compact Representations of Some Non-canonical Prefix-Free Codes. - Antonio Fariña; Travis Gagie; Giovanni Manzini; Gonzalo Navarro 001; Alberto Ordóñez Pereira (SPIRE, 2016)

XBWT Tricks. - Giovanni Manzini (SPIRE, 2016)

Compressing and Indexing Stock Market Data. - Gianni Decaroli; Giovanni Manzini (CoRR, 2016)

Toward a Succinct Index for Order-Preserving Pattern Matching. - Travis Gagie; Giovanni Manzini (CoRR, 2016)

From H&M to Gap for Lightweight BWT Merging. - Giovanni Manzini (CoRR, 2016)

Boosting Textual Compression. - Paolo Ferragina; Giovanni Manzini (Encyclopedia of Algorithms, 2016)

Burrows-Wheeler Transform. - Paolo Ferragina; Giovanni Manzini (Encyclopedia of Algorithms, 2016)

Dictionary-Based Data Compression. - Travis Gagie; Giovanni Manzini (Encyclopedia of Algorithms, 2016)

Wheeler Graphs: Variations on a Theme by Burrows and Wheeler. - Giovanni Manzini (CPM, 2017)

An Encoding for Order-Preserving Matching. - Travis Gagie; Giovanni Manzini; Rossano Venturini (ESA, 2017)

Lightweight BWT and LCP Merging via the Gap Algorithm. - Lavinia Egidi; Giovanni Manzini (SPIRE, 2017)

Compressed Spaced Suffix Arrays. - Travis Gagie; Giovanni Manzini; Daniel Valenzuela 001 (Math. Comput. Sci., 2017)

Wheeler graphs: A framework for BWT-based data structures. - Travis Gagie; Giovanni Manzini; Jouni Sirén (Theor. Comput. Sci., 2017)

Block Sorting-Based Transformations on Words: Beyond the Magic BWT. - Raffaele Giancarlo; Giovanni Manzini; Antonio Restivo; Giovanna Rosone; Marinella Sciortino (DLT, 2018)

Prefix-Free Parsing for Building Big BWTs. - Christina Boucher 001; Travis Gagie; Alan Kuhnle; Giovanni Manzini (WABI, 2018)

STAble: a novel approach to de novo assembly of RNA-seq data and its application in a metabolic model network based metatranscriptomic workflow. - Igor Saggese; Elisa Bona; Maxwell Conway; Francesco Favero; Marco Ladetto; Pietro Liò; Giovanni Manzini; Flavio Mignone (BMC Bioinform., 2018)

Prefix-Free Parsing for Building Big BWTs. - Travis Gagie; Giovanni Manzini (CoRR, 2018)

Lyndon array construction during Burrows-Wheeler inversion. - Felipe A. Louza; William F. Smyth; Giovanni Manzini; Guilherme P. Telles (J. Discrete Algorithms, 2018)

A New Class of Searchable and Provably Highly Compressible String Transformations. - Raffaele Giancarlo; Giovanni Manzini; Giovanna Rosone; Marinella Sciortino (CPM, 2019)

Space-Efficient Merging of Succinct de Bruijn Graphs. - Lavinia Egidi; Felipe A. Louza; Giovanni Manzini (SPIRE, 2019)

Rpair: Rescaling RePair with Rsync. - Travis Gagie; Tomohiro I; Giovanni Manzini; Gonzalo Navarro 001; Hiroshi Sakamoto; Yoshimasa Takabatake (SPIRE, 2019)

Inducing the Lyndon Array. - Felipe A. Louza; Sabrina Mantaci; Giovanni Manzini; Marinella Sciortino; Guilherme P. Telles (SPIRE, 2019)

Prefix-free parsing for building big BWTs. - Christina Boucher 001; Travis Gagie; Alan Kuhnle; Ben Langmead; Giovanni Manzini; Taher Mun (Algorithms Mol. Biol., 2019)

External memory BWT and LCP computation for sequence collections with applications. - Lavinia Egidi; Felipe A. Louza; Giovanni Manzini; Guilherme P. Telles (Algorithms Mol. Biol., 2019)

Tree-Shape Grammars for Random Access. - Travis Gagie; Tomohiro I; Giovanni Manzini; Gonzalo Navarro 001; Hiroshi Sakamoto; Louisa Seelbach Benkner; Yoshimasa Takabatake (CoRR, 2019)

25 Years of the Burrows-Wheeler Transform (Dagstuhl Seminar 19241). - Travis Gagie; Giovanni Manzini; Gonzalo Navarro 001; Jens Stoye (Dagstuhl Reports, 2019)

A compact index for order-preserving pattern matching. - Gianni Decaroli; Travis Gagie; Giovanni Manzini (Softw. Pract. Exp., 2019)

Practical Random Access to SLP-Compressed Texts. - Travis Gagie; Tomohiro I; Giovanni Manzini; Gonzalo Navarro 001; Hiroshi Sakamoto; Louisa Seelbach Benkner; Yoshimasa Takabatake (SPIRE, 2020)

PFP Data Structures. - Christina Boucher 001; Ondrej Cvacho; Travis Gagie; Jan Holub 001; Giovanni Manzini; Gonzalo Navarro 001; Massimiliano Rossi 001 (CoRR, 2020)

Efficient Construction of a Complete Index for Pan-Genomics Read Alignment. - Alan Kuhnle; Taher Mun; Christina Boucher 001; Travis Gagie; Ben Langmead; Giovanni Manzini (J. Comput. Biol., 2020)

Matching Reads to Many Genomes with the r-Index. - Taher Mun; Alan Kuhnle; Christina Boucher 001; Travis Gagie; Ben Langmead; Giovanni Manzini (J. Comput. Biol., 2020)

Lightweight merging of compressed indices based on BWT variants. - Lavinia Egidi; Giovanni Manzini (Theor. Comput. Sci., 2020)

The Alternating BWT: An algorithmic perspective. - Raffaele Giancarlo; Giovanni Manzini; Antonio Restivo; Giovanna Rosone; Marinella Sciortino (Theor. Comput. Sci., 2020)

PFP Compressed Suffix Trees. - Christina Boucher 001; Ondrej Cvacho; Travis Gagie; Jan Holub 001; Giovanni Manzini; Gonzalo Navarro 001; Massimiliano Rossi 001 (ALENEX, 2021)

PHONI: Streamed Matching Statistics with Multi-Genome References. - Christina Boucher 001; Travis Gagie; Tomohiro I; Dominik Köppl; Ben Langmead; Giovanni Manzini; Gonzalo Navarro 001; Alejandro Pacheco; Massimiliano Rossi 001 (DCC, 2021)

Efficiently Merging r-indexes. - Marco Oliva; Massimiliano Rossi 001; Jouni Sirén; Giovanni Manzini; Tamer Kahveci; Travis Gagie; Christina Boucher 001 (DCC, 2021)

Repetition- and Linearity-Aware Rank/Select Dictionaries. - Paolo Ferragina; Giovanni Manzini; Giorgio Vinciguerra (ISAAC, 2021)

Compressing and Indexing Aligned Readsets. - Travis Gagie; Garance Gourdel; Giovanni Manzini (WABI, 2021)

EZcount: An all-in-one software for microRNA expression quantification from NGS sequencing data. - Filippo Geraci; Giovanni Manzini (Comput. Biol. Medicine, 2021)

Compressing and Querying Integer Dictionaries Under Linearities and Repetitions. - Paolo Ferragina; Giovanni Manzini; Giorgio Vinciguerra (IEEE Access, 2022)

Space Efficient Merging of de Bruijn Graphs and Wheeler Graphs. - Lavinia Egidi; Felipe A. Louza; Giovanni Manzini (Algorithmica, 2022)

Teaching the Burrows-Wheeler Transform via the Positional Burrows-Wheeler Transform. - Travis Gagie; Giovanni Manzini; Marinella Sciortino (CoRR, 2022)

Improving Matrix-vector Multiplication via Lossless Grammar-Compressed Matrices. - Paolo Ferragina; Giovanni Manzini; Travis Gagie; Dominik Köppl; Gonzalo Navarro 001; Manuel Striani; Francesco Tosoni 001 (Proc. VLDB Endow., 2022)

Efficient and compact representations of some non-canonical prefix-free codes. - Antonio Fariña; Travis Gagie; Szymon Grabowski; Giovanni Manzini; Gonzalo Navarro 001; Alberto Ordóñez Pereira (Theor. Comput. Sci., 2022)

Computing matching statistics on Wheeler DFAs. - Alessio Conte; Nicola Cotumaccio; Travis Gagie; Giovanni Manzini; Nicola Prezza; Marinella Sciortino (DCC, 2023)

Compressibility Measures for Two-Dimensional Data. - Lorenzo Carfagna; Giovanni Manzini (SPIRE, 2023)

Suffixient Sets. - Lore Depuydt; Travis Gagie; Ben Langmead; Giovanni Manzini; Nicola Prezza (CoRR, 2023)

A new class of string transformations for compressed text indexing. - Raffaele Giancarlo; Giovanni Manzini; Antonio Restivo; Giovanna Rosone; Marinella Sciortino (Inf. Comput., 2023)

Computing the LCP Array of a Labeled Graph. - Jarno N. Alanko; Davide Cenzato; Nicola Cotumaccio; Sung-Hwan Kim; Giovanni Manzini; Nicola Prezza (CPM, 2024)

The Rational Construction of a Wheeler DFA. - Giovanni Manzini; Alberto Policriti; Nicola Prezza; Brian Riccardi (CPM, 2024)

Generalization of Repetitiveness Measures for Two-Dimensional Strings. - Lorenzo Carfagna; Giovanni Manzini; Giuseppe Romana; Marinella Sciortino; Cristian Urbina (SPIRE, 2024)

Taxonomic Classification with Maximal Exact Matches in KATKA Kernels and Minimizer Digests. - Dominika Draesslerová; Omar Y. Ahmed; Travis Gagie; Jan Holub 001; Ben Langmead; Giovanni Manzini; Gonzalo Navarro 001 (SEA, 2024)

The Landscape of Compressibility Measures for Two-Dimensional Data. - Lorenzo Carfagna; Giovanni Manzini (IEEE Access, 2024)

Movelet Trees. - Travis Gagie; Giovanni Manzini; Gonzalo Navarro 001; Marinella Sciortino (CoRR, 2024)

Faster Run-Length Compressed Suffix Arrays. - Nathaniel K. Brown; Travis Gagie; Giovanni Manzini; Gonzalo Navarro 001; Marinella Sciortino (From Strings to Graphs, and Back Again, 2025)

Wavelet Tree, Part I: A Brief History. - Paolo Ferragina; Raffaele Giancarlo; Giovanni Manzini; Giovanna Rosone; Rossano Venturini; Jeffrey Scott Vitter (From Strings to Graphs, and Back Again, 2025)

Scalable Compression of Massive Data Collections on HPC Systems. - Loris Belcastro; Paolo Ferragina; Giovanni Manzini; Fabrizio Marozzo; Domenico Talia; Paolo Trunfio (Euro-Par (2), 2025)

Toward Greener Matrix Operations by Lossless Compressed Formats. - Francesco Tosoni 001; Philip Bille; Valerio Brunacci; Alessio De Angelis; Paolo Ferragina; Giovanni Manzini (IEEE Access, 2025)

On the compressibility of large-scale source code datasets. - Antonio Boffa; Roberto Di Cosmo; Paolo Ferragina; Andrea Guerra; Giovanni Manzini; Giorgio Vinciguerra; Stefano Zacchiroli (J. Syst. Softw., 2025)

Depth first representations of k2-trees. - Gabriel Carmona; Giovanni Manzini (CoRR, 2025)

Prefix-free parsing for merging big BWTs. - Diego Díaz-Domínguez; Travis Gagie; Veronica Guerrini; Ben Langmead; Zsuzsanna Lipták; Giovanni Manzini; Francesco Masillo; Vikram Shivakumar (CoRR, 2025)

Compressing Suffix Trees by Path Decompositions. - Ruben Becker; Davide Cenzato; Travis Gagie; Sung-Hwan Kim; Ragnar Groot Koerkamp; Giovanni Manzini; Nicola Prezza (CoRR, 2025)