GASOLINE: a Cytoscape app for multiple local alignment of PPI networks. - Giovanni Micale; Andrea Continella; Alfredo Ferro; Rosalba Giugno; Alfredo Pulvirenti (F1000Research, 2014)

NetMatchStar: an enhanced Cytoscape network querying app. - Fabio Rinnone; Giovanni Micale; Vincenzo Bonnici; Gary D. Bader; Dennis E. Shasha; Alfredo Ferro; Alfredo Pulvirenti; Rosalba Giugno (F1000Research, 2015)

A Gibbs sampling strategy for mining of protein-protein interaction networks and protein structures. - Giovanni Micale (2015)

APPAGATO: an APproximate PArallel and stochastic GrAph querying TOol for biological networks. - Vincenzo Bonnici; Federico Busato; Giovanni Micale; Nicola Bombieri; Alfredo Pulvirenti; Rosalba Giugno (Bioinform., 2016)

Mining and ranking of generalized multi-dimensional frequent subgraphs. - Andre Petermann; Giovanni Micale; Giacomo Bergami; Alfredo Pulvirenti; Erhard Rahm (ICDIM, 2017)

gLabTrie: A Data Structure for Motif Discovery with Constraints. - Misael Mongiovì; Giovanni Micale; Alfredo Ferro; Rosalba Giugno; Alfredo Pulvirenti; Dennis E. Shasha (Graph Data Management, 2018)

Simple Pattern-only Heuristics Lead to Fast Subgraph Matching Strategies on Very Large Networks. - Antonino Aparo; Vincenzo Bonnici; Giovanni Micale; Alfredo Ferro; Dennis E. Shasha; Alfredo Pulvirenti; Rosalba Giugno (PACBB, 2018)

INBIA: a boosting methodology for proteomic network inference. - Davide S. Sardina; Giovanni Micale; Alfredo Ferro; Alfredo Pulvirenti; Rosalba Giugno (BMC Bioinform., 2018)

Fast analytical methods for finding significant labeled graph motifs. - Giovanni Micale; Rosalba Giugno; Alfredo Ferro; Misael Mongiovì; Dennis E. Shasha; Alfredo Pulvirenti (Data Min. Knowl. Discov., 2018)

Establish the Expected Number of Injective Motifs on Unlabeled Graphs Through Analytical Models. - Emanuele Martorana; Giovanni Micale; Alfredo Ferro; Alfredo Pulvirenti (COMPLEX NETWORKS (2), 2019)

Fast methods for finding significant motifs on labelled multi-relational networks. - Giovanni Micale; Alfredo Pulvirenti; Alfredo Ferro; Rosalba Giugno; Dennis E. Shasha (J. Complex Networks, 2019)

TemporalRI: A Subgraph Isomorphism Algorithm for Temporal Networks. - Giorgio Locicero; Giovanni Micale; Alfredo Pulvirenti; Alfredo Ferro (COMPLEX NETWORKS (2), 2020)

Establish the expected number of induced motifs on unlabeled graphs through analytical models. - Emanuele Martorana; Giovanni Micale; Alfredo Ferro; Alfredo Pulvirenti (Appl. Netw. Sci., 2020)

MultiRI: Fast Subgraph Matching in Labeled Multigraphs. - Giovanni Micale; Vincenzo Bonnici; Alfredo Ferro; Dennis E. Shasha; Rosalba Giugno; Alfredo Pulvirenti (CoRR, 2020)

TemporalRI: subgraph isomorphism in temporal networks with multiple contacts. - Giovanni Micale; Giorgio Locicero; Alfredo Pulvirenti; Alfredo Ferro (Appl. Netw. Sci., 2021)

MODIT: MOtif DIscovery in Temporal Networks. - Roberto Grasso; Giovanni Micale; Alfredo Ferro; Alfredo Pulvirenti (Frontiers Big Data, 2021)

Motif Finding Algorithms: A Performance Comparison. - Emanuele Martorana; Roberto Grasso; Giovanni Micale; Salvatore Alaimo; Dennis E. Shasha; Rosalba Giugno; Alfredo Pulvirenti (From Computational Logic to Computational Biology, 2024)

Mining Frequent Structures in Conceptual Models. - Mattia Fumagalli; Tiago Prince Sales; Pedro Paulo F. Barcelos; Giovanni Micale; Vadim Zaytsev; Diego Calvanese; Giancarlo Guizzardi (CoRR, 2024)

ArcMatch: high-performance subgraph matching for labeled graphs by exploiting edge domains. - Vincenzo Bonnici; Roberto Grasso; Giovanni Micale; Antonio Di Maria; Dennis Shasha; Alfredo Pulvirenti; Rosalba Giugno (Data Min. Knowl. Discov., 2024)

MultiGraphMatch: A Subgraph Matching Algorithm for Multigraphs. - Giovanni Micale; Antonio Di Maria; Roberto Grasso; Vincenzo Bonnici; Alfredo Ferro; Dennis Shasha; Rosalba Giugno; Alfredo Pulvirenti (ACM Trans. Knowl. Discov. Data, 2025)