RandomBlast a tool to generate random "never born protein" sequences. - Giuseppe Evangelista; Giovanni Minervini; Pier Luigi Luisi; Fabio Polticelli (Bio Algorithms Med Syst., 2007)

High throughput protein structure prediction in a grid environment. - Giovanni Minervini; Giuseppe La Rocca; Pier Luigi Luisi; Fabio Polticelli (Bio Algorithms Med Syst., 2007)

Massive non-natural proteins structure prediction using grid technologies. - Giovanni Minervini; Giuseppe Evangelista; Laura Villanova; Debora Slanzi; Davide De Lucrezia; Irene Poli; Pier Luigi Luisi; Fabio Polticelli (BMC Bioinform., 2009)

A Model Based Ant Colony Design for the Protein Engineering Problem. - Matteo Borrotti; Davide De Lucrezia; Giovanni Minervini; Irene Poli (ANTS Conference, 2010)

Ab initio protein structure prediction - the hydrophobicity distribution analysis. - Giuseppe Evangelista; Giovanni Minervini; Fabio Polticelli; Maciej Malawski; Tomasz Szepieniec; Lukasz Flis; Katarzyna Prymula; Marek Kochanczyk; Ewa Matczynska; Zdzislaw Wisniowski; Kinga Salapa; Mateusz Banach; et al. (Bio Algorithms Med Syst., 2011)

In silico blood genotyping from exome sequencing data. - Manuel Giollo; Giovanni Minervini; Marta Scalzotto; Emanuela Leonardi; Carlo Ferrari; Silvio C. E. Tosatto (AIMM, 2012)

Bluues server: electrostatic properties of wild-type and mutated protein structures. - Ian Walsh; Giovanni Minervini; Alessandra Corazza; Gennaro Esposito; Silvio C. E. Tosatto; Federico Fogolari (Bioinform., 2012)

RAPHAEL: recognition, periodicity and insertion assignment of solenoid protein structures. - Ian Walsh; Francesco Sirocco; Giovanni Minervini; Tomás Di Domenico; Carlo Ferrari; Silvio C. E. Tosatto (Bioinform., 2012)

RepeatsDB: a database of tandem repeat protein structures. - Tomás Di Domenico; Emilio Potenza; Ian Walsh; R. Gonzalo Parra; Manuel Giollo; Giovanni Minervini; Damiano Piovesan; Awais Ihsan; Carlo Ferrari; Andrey V. Kajava; Silvio C. E. Tosatto (Nucleic Acids Res., 2014)

Naïve Bayes ant colony optimization for designing high dimensional experiments. - Matteo Borrotti; Giovanni Minervini; Davide De Lucrezia; Irene Poli (Appl. Soft Comput., 2016)

The RING 2.0 web server for high quality residue interaction networks. - Damiano Piovesan; Giovanni Minervini; Silvio C. E. Tosatto (Nucleic Acids Res., 2016)

In silico study of the structure and function of Streptococcus mutans plasmidic proteins. - Silvia Caprari; Giovanni Minervini; Valentina Brandi; Fabio Polticelli (Bio Algorithms Med Syst., 2017)

FELLS: fast estimator of latent local structure. - Damiano Piovesan; Ian Walsh; Giovanni Minervini; Silvio C. E. Tosatto (Bioinform., 2017)

DisProt 7.0: a major update of the database of disordered proteins. - Damiano Piovesan; Francesco Tabaro; Ivan Micetic; Marco Necci; Federica Quaglia; Christopher J. Oldfield; Maria Cristina Aspromonte; Norman E. Davey; Radoslav Davidovic; Zsuzsanna Dosztányi; Arne Elofsson; Alessandra Gasparini; et al. (Nucleic Acids Res., 2017)

Genotype-phenotype relations of the von Hippel-Lindau tumor suppressor inferred from a large-scale analysis of disease mutations and interactors. - Giovanni Minervini; Federica Quaglia; Francesco Tabaro; Silvio C. E. Tosatto (PLoS Comput. Biol., 2019)

DisProt: intrinsic protein disorder annotation in 2020. - András Hatos; Borbála Hajdu-Soltész; Alexander Miguel Monzon; Nicolas Palopoli; Lucía Álvarez; Burcu Aykaç Fas; Claudio Bassot; Guillermo I. Benítez; Martina Bevilacqua; Anastasia Chasapi; Lucía B. Chemes; Norman E. Davey; et al. (Nucleic Acids Res., 2020)

Assessing predictors for new post translational modification sites: A case study on hydroxylation. - Damiano Piovesan; András Hatos; Giovanni Minervini; Federica Quaglia; Alexander Miguel Monzon; Silvio C. E. Tosatto (PLoS Comput. Biol., 2020)

Mocafe: a comprehensive Python library for simulating cancer development with Phase Field Models. - Franco Pradelli; Giovanni Minervini; Silvio C. E. Tosatto (Bioinform., 2022)

RING 3.0: fast generation of probabilistic residue interaction networks from structural ensembles. - Damiano Clementel; Alessio Del Conte; Alexander Miguel Monzon; Giorgia F. Camagni; Giovanni Minervini; Damiano Piovesan; Silvio C. E. Tosatto (Nucleic Acids Res., 2022)

DisProt in 2022: improved quality and accessibility of protein intrinsic disorder annotation. - Federica Quaglia; Bálint Mészáros; Edoardo Salladini; András Hatos; Rita Pancsa; Lucía B. Chemes; Mátyás Pajkos; Tamas Lazar; Samuel Peña-Díaz; Jaime Santos; Veronika Ács; Nazanin Farahi; et al. (Nucleic Acids Res., 2022)

RING-PyMOL: residue interaction networks of structural ensembles and molecular dynamics. - Alessio Del Conte; Alexander Miguel Monzon; Damiano Clementel; Giorgia F. Camagni; Giovanni Minervini; Silvio C. E. Tosatto; Damiano Piovesan (Bioinform., 2023)