Quasi-Newton Stochastic Optimization Algorithm for Parameter Estimation of a Stochastic Model of the Budding Yeast Cell Cycle. - Minghan Chen; Brandon D. Amos; Layne T. Watson; John J. Tyson; Young Cao; Clifford A. Shaffer; Michael W. Trosset; Cihan Oguz; Gisella Kakoti (IEEE ACM Trans. Comput. Biol. Bioinform., 2019)

Co-designing Large Language Model Tools for Project-Based Learning with K12 Educators. - Prerna Ravi; John Masla; Gisella Kakoti; Grace C. Lin; Emma Anderson; Matt Taylor; Anastasia K. Ostrowski; Cynthia Breazeal; Eric Klopfer; Hal Abelson (CHI, 2025)