Algorithms for large-scale genotyping microarrays. - Wei-Min Liu; Xiaojun Di; Geoffrey Yang; Hajime Matsuzaki; Jing Huang 024; Rui Mei; Thomas B. Ryder; Teresa A. Webster; Shoulian Dong; Guoying Liu; Keith W. Jones; Giulia C. Kennedy; et al. (Bioinform., 2003)

Dynamic model based algorithms for screening and genotyping over 100K SNPs on oligonucleotide microarrays. - Xiaojun Di; Hajime Matsuzaki; Teresa A. Webster; Earl Hubbell; Guoying Liu; Shoulian Dong; Dan Bartell; Jing Huang 024; Richard Chiles; Geoffrey Yang; Mei-mei Shen; David Kulp; et al. (Bioinform., 2005)

A whole genome long-range haplotype (WGLRH) test for detecting imprints of positive selection in human populations. - Chun Zhang; Dione K. Bailey; Tarif Awad; Guoying Liu; Guoliang Xing; Manqiu Cao; Venu Valmeekam; Jacques Retief; Hajime Matsuzaki; Margaret Taub; Mark Seielstad; Giulia C. Kennedy (Bioinform., 2006)

Assessment of algorithms for high throughput detection of genomic copy number variation in oligonucleotide microarray data. - Ágnes Baross; Allen D. Delaney; H. Irene Li; Tarun Nayar; Stephane Flibotte; Hong Qian; Susanna Y. Chan; Jennifer Asano; Adrian Ally; Manqiu Cao; Patricia Birch; Mabel Brown-John; et al. (BMC Bioinform., 2007)

Machine Learning from Concept to Clinic: Reliable Detection of BRAF V600E DNA Mutations in Thyroid Nodules Using High-Dimensional RNA Expression Data. - James Diggans; Su Yeon Kim; Zhanzhi Hu; Daniel G. Pankratz; Mei G. Wong; Jessica Reynolds; Ed Y. Tom; Moraima Pagan; Robert J. Monroe; Juan Rosai; Virginia A. Livolsi; Richard B. Lanman; et al. (Pacific Symposium on Biocomputing, 2015)

The diagnostic application of RNA sequencing in patients with thyroid cancer: an analysis of 851 variants and 133 fusions in 524 genes. - Moraima Pagan; Richard T. Kloos; Chu-Fang Lin; Kevin J. Travers; Hajime Matsuzaki; Ed Y. Tom; Su Yeon Kim; Mei G. Wong; Andrew C. Stewart; Jing Huang 024; P. Sean Walsh; Robert J. Monroe; et al. (BMC Bioinform., 2016)

Repurposing kinship coefficients as a sample integrity method for next generation sequencing data in a clinical setting. - Yoonha Choi; Joshua Babiarz; Ed Y. Tom; Giulia C. Kennedy; Jing Huang 024 (Model. Assist. Stat. Appl., 2017)

Identification of usual interstitial pneumonia pattern using RNA-Seq and machine learning: challenges and solutions. - Yoonha Choi; Tiffany Ting Liu; Daniel G. Pankratz; Thomas V. Colby; Neil M. Barth; David A. Lynch; P. Sean Walsh; Ganesh Raghu; Giulia C. Kennedy; Jing Huang 024 (BMC Genom., 2018)

Identification of Hürthle cell cancers: solving a clinical challenge with genomic sequencing and a trio of machine learning algorithms. - Yangyang Hao; Quan-Yang Duh; Richard T. Kloos; Joshua Babiarz; R. Mack Harrell; S. Thomas Traweek; Su Yeon Kim; Grazyna Fedorowicz; P. Sean Walsh; Peter M. Sadow; Jing Huang 024; Giulia C. Kennedy (BMC Syst. Biol., 2019)