adLIMS: a customized open source software that allows bridging clinical and basic molecular research studies. - Andrea Calabria; Giulio Spinozzi; Fabrizio Benedicenti; Erika Tenderini; Eugenio Montini (BMC Bioinform., 2015)

VISPA2: a scalable pipeline for high-throughput identification and annotation of vector integration sites. - Giulio Spinozzi; Andrea Calabria; Stefano Brasca; Stefano Beretta 001; Ivan Merelli; Luciano Milanesi; Eugenio Montini (BMC Bioinform., 2017)

Anti-Cancer Drug Resistance Causal Modeling from Lentiviral-Vector Integration Site Studies. - Giulio Spinozzi (2017)

A comprehensive RNA-Seq pipeline includes meta-analysis, interactivity and automatic reporting. - Giulio Spinozzi; Valentina Tini; Laura Mincarelli; Brunangelo Falini; Maria Paola Martelli (PeerJ Prepr., 2018)

γ-TRIS: a graph-algorithm for comprehensive identification of vector genomic insertion sites. - Andrea Calabria; Stefano Beretta 001; Ivan Merelli; Giulio Spinozzi; Stefano Brasca; Yuri Pirola; Fabrizio Benedicenti; Erika Tenderini; Paola Bonizzoni; Luciano Milanesi; Eugenio Montini (Bioinform., 2020)

ARPIR: automatic RNA-Seq pipelines with interactive report. - Giulio Spinozzi; Valentina Tini; Alessia Adorni; Brunangelo Falini; Maria Paola Martelli (BMC Bioinform., 2020)

InCliniGene enables high-throughput and comprehensive in vivo clonal tracking toward clinical genomics data integration. - Ivan Merelli; Stefano Beretta 001; Daniela Cesana; Alessandro Gennari; Fabrizio Benedicenti; Giulio Spinozzi; Daniele Cesini; Eugenio Montini; Daniele D'Agostino; Andrea Calabria (Database J. Biol. Databases Curation, 2023)

ISAnalytics enables longitudinal and high-throughput clonal tracking studies in hematopoietic stem cell gene therapy applications. - Giulia Pais; Giulio Spinozzi; Daniela Cesana; Fabrizio Benedicenti; Alessandra Albertini; Maria Ester Bernardo; Bernhard Gentner; Eugenio Montini; Andrea Calabria (Briefings Bioinform., 2023)

UNICOM Test Lab: Implementation of ISO's IDMP Standards Across the EU. - Haralampos Karanikas; Anargyros Gkogkidis; Alexander Berler; Simone Diaco; Giulio Spinozzi; Tommaso Foglia; Sofia Franconi; José Costa Teixeira; Derek Ritz; Robert A. Stegwee; Zain Ishfaq; Marcello Melgara; et al. (MIE, 2024)