COMPASSS (COMplex PAttern of Sequence Search Software), a simple and effective tool for mining complex motifs in whole genomes. - Giuseppe Maccari; Federica Gemignani; Stefano Landi (Bioinform., 2010)

Antimicrobial Peptides Design by Evolutionary Multiobjective Optimization. - Giuseppe Maccari; Mariagrazia Di Luca; Riccardo Nifosí; Francesco Cardarelli; Giovanni Signore; Claudia Boccardi; Angelo Bifone (PLoS Comput. Biol., 2013)

SecStAnT: secondary structure analysis tool for data selection, statistics and models building. - Giuseppe Maccari; Giulia L. B. Spampinato; Valentina Tozzini (Bioinform., 2014)

IPD-MHC 2.0: an improved inter-species database for the study of the major histocompatibility complex. - Giuseppe Maccari; James Robinson; Keith Ballingall; Lisbeth A. Guethlein; Unni Grimholt; Jim Kaufman; Chak-Sum Ho; Natasja de Groot; Paul Flicek; Ronald Bontrop; John A. Hammond; Steven G. E. Marsh (Nucleic Acids Res., 2017)

CrossCT: CNN and Transformer cross–teaching for multimodal image cell segmentation. - Sara Joubbi; Giorgio Ciano; Dario Cardamone; Giuseppe Maccari; Duccio Medini (Cell Segmentation Challenge @ NeurIPS, 2022)

Pre-trained Models Based on Primary Sequence to Classify Antibody Binding to Protein and Non-protein Targets with 80% Accuracy. - Sara Joubbi; Giuseppe Maccari; Dario Cardamone; Giorgio Ciano; Alessio Micheli; Paolo Milazzo; Duccio Medini (CIBB, 2023)

The IPD-IMGT/HLA Database. - Dominic J. Barker; Giuseppe Maccari; Xenia Georgiou; Michael A. Cooper; Paul Flicek; James Robinson; Steven G. E. Marsh (Nucleic Acids Res., 2023)

IgMAT: immunoglobulin sequence multi-species annotation tool for any species including those with incomplete antibody annotation or unusual characteristics. - Daniel Dorey-Robinson; Giuseppe Maccari; John A. Hammond (BMC Bioinform., 2023)

Deep Learning for Classifying Anti-Shigella Opsono- Phagocytosis-Promoting Monoclonal Antibodies. - Elena Pianfetti; Dario Cardamone; Emanuele Roscioli; Giorgio Ciano; Giuseppe Maccari; Claudia Sala; Francesca Micoli; Rino Rappuoli; Duccio Medini; Elisa Ficarra (MOVI@MICCAI, 2024)

Antibody design using deep learning: from sequence and structure design to affinity maturation. - Sara Joubbi; Alessio Micheli; Paolo Milazzo; Giuseppe Maccari; Giorgio Ciano; Dario Cardamone; Duccio Medini (Briefings Bioinform., 2024)

Improving Antibody-Antigen Interaction Prediction Through Flexibility with ESMFold. - Sara Joubbi; Giuseppe Maccari; Giorgio Ciano; Alessio Micheli; Paolo Milazzo; Duccio Medini (BIOSTEC (1), 2025)