How to Escape Traps Using Clonal Selection Algorithms. - Vincenzo Cutello; Giuseppe Narzisi; Giuseppe Nicosia; Mario Pavone; Giuseppe Sorace (ICINCO (1), 2004)

An Immunological Algorithm for Global Numerical Optimization. - Vincenzo Cutello; Giuseppe Narzisi; Giuseppe Nicosia; Mario Pavone (Artificial Evolution, 2005)

A Class of Pareto Archived Evolution Strategy Algorithms Using Immune Inspired Operators for Ab-Initio Protein Structure Prediction. - Vincenzo Cutello; Giuseppe Narzisi; Giuseppe Nicosia (EvoWorkshops, 2005)

Clonal Selection Algorithms: A Comparative Case Study Using Effective Mutation Potentials. - Vincenzo Cutello; Giuseppe Narzisi; Giuseppe Nicosia; Mario Pavone (ICARIS, 2005)

Lipschitzian Pattern Search and Immunological Algorithm with Quasi-Newton Method for the Protein Folding Problem: An Innovative Multistage Approach. - Angelo Marcello Anile; Vincenzo Cutello; Giuseppe Narzisi; Giuseppe Nicosia; Salvatore Spinella (WIRN/NAIS, 2005)

Multi-objective evolutionary optimization of agent-based models: An application to emergency response planning. - Giuseppe Narzisi; Venkatesh Mysore; Bud Mishra (Computational Intelligence, 2006)

Resilience in the Face of Disaster: Accounting for Varying Disaster Magnitudes, Resource Topologies, and (Sub)Population Distributions in the PLAN C Emergency Planning Tool. - Giuseppe Narzisi; Joshua S. Mincer; Silas Smith; Bud Mishra (HoloMAS, 2007)

Determination of protein structure and dynamics combining immune algorithms and pattern search methods. - Angelo Marcello Anile; Vincenzo Cutello; Giuseppe Narzisi; Giuseppe Nicosia; Salvatore Spinella (Nat. Comput., 2007)

Computational Studies of Peptide and Protein Structure Prediction Problems via Multiobjective Evolutionary Algorithms. - Vincenzo Cutello; Giuseppe Narzisi; Giuseppe Nicosia (Multiobjective Problem Solving from Nature, 2008)

Modeling and simulation of e-mail social networks: A new stochastic agent-based approach. - Fabian Menges; Bud Mishra; Giuseppe Narzisi (WSC, 2008)

TotalReCaller: improved accuracy and performance via integrated alignment and base-calling. - Fabian Menges; Giuseppe Narzisi; Bud Mishra (Bioinform., 2011)

Scoring-and-unfolding trimmed tree assembler: concepts, constructs and comparisons. - Giuseppe Narzisi; Bud Mishra (Bioinform., 2011)

Scoring-and-Unfolding Trimmed Tree Assembler: Algorithms for Assembling Genome Sequences Accurately and Efficiently. - Giuseppe Narzisi (2011)

Reevaluating Assembly Evaluations with Feature Response Curves: GAGE and Assemblathons - Francesco Vezzi; Giuseppe Narzisi; Bud Mishra (CoRR, 2012)

Clonal selection: an immunological algorithm for global optimization over continuous spaces. - Mario Pavone; Giuseppe Narzisi; Giuseppe Nicosia (J. Glob. Optim., 2012)

Hawkeye and AMOS: visualizing and assessing the quality of genome assemblies. - Michael C. Schatz; Adam M. Phillippy; Daniel D. Sommer; Arthur L. Delcher; Daniela Puiu; Giuseppe Narzisi; Steven L. Salzberg; Mihai Pop (Briefings Bioinform., 2013)

On Algorithmic Complexity of Biomolecular Sequence Assembly Problem. - Giuseppe Narzisi; Bud Mishra; Michael C. Schatz (AlCoB, 2014)

The contribution of de novo coding mutations to autism spectrum disorder. - Ivan Iossifov; Brian J. O'Roak; Stephan J. Sanders; Michael Ronemus; Niklas Krumm; Dan Levy; Holly A. Stessman; Kali T. Witherspoon; Laura Vives; Karynne E. Patterson; Joshua D. Smith; Bryan Paeper; et al. (Nat., 2014)

ExpansionHunter: a sequence-graph-based tool to analyze variation in short tandem repeat regions. - Egor Dolzhenko; Viraj Deshpande; Felix Schlesinger; Peter Krusche; Roman Petrovski; Sai Chen; Dorothea Emig-Agius; Andrew Gross; Giuseppe Narzisi; Brett Bowman; Konrad Scheffler; Joke J. F. A van Vugt; et al. (Bioinform., 2019)

A crowdsourced set of curated structural variants for the human genome. - Lesley M. Chapman; Noah Spies; Patrick Pai; Chun Shen Lim; Andrew Carroll; Giuseppe Narzisi; Christopher M. Watson; Christos Proukakis; Wayne E. Clarke; Naoki Nariai; Eric T. Dawson; Garan Jones; et al. (PLoS Comput. Biol., 2020)

Somatic variant analysis of linked-reads sequencing data with Lancet. - Rajeeva Musunuri; Kanika Arora; André Corvelo; Minita Shah; Jennifer Shelton; Michael C. Zody; Giuseppe Narzisi (Bioinform., 2021)