The human "magnesome": detecting magnesium binding sites on human proteins. - Damiano Piovesan; Giuseppe Profiti; Pier Luigi Martelli; Rita Casadio (BMC Bioinform., 2012)

Community Detection within Clusters Helps Large Scale Protein Annotation - Preliminary Results of Modularity Maximization for the BAR+ Database. - Giuseppe Profiti; Damiano Piovesan; Pier Luigi Martelli; Piero Fariselli; Rita Casadio (BIOINFORMATICS, 2013)

Protein Sequence Annotation by means of Community Detection. - Giuseppe Profiti; Damiano Piovesan; Pier Luigi Martelli; Piero Fariselli; Rita Casadio (IWBBIO, 2013)

SUS-BAR: a database of pig proteins with statistically validated structural and functional annotation. - Damiano Piovesan; Giuseppe Profiti; Pier Luigi Martelli; Piero Fariselli; Luca Fontanesi; Rita Casadio (Database J. Biol. Databases Curation, 2013)

How to inherit statistically validated annotation within BAR+ protein clusters. - Damiano Piovesan; Pier Luigi Martelli; Piero Fariselli; Giuseppe Profiti; Andrea Zauli; Ivan Rossi; Rita Casadio (BMC Bioinform., 2013)

Extended and Robust Protein Sequence Annotation over Conservative Nonhierarchical Clusters: The Case Study of the ABC Transporters. - Damiano Piovesan; Giuseppe Profiti; Pier Luigi Martelli; Piero Fariselli; Rita Casadio (ACM J. Emerg. Technol. Comput. Syst., 2013)

AlignBucket: a tool to speed up 'all-against-all' protein sequence alignments optimizing length constraints. - Giuseppe Profiti; Piero Fariselli; Rita Casadio (Bioinform., 2015)

Graph algorithms for bioinformatics. - Giuseppe Profiti (2015)

Tools and data services registry: a community effort to document bioinformatics resources. - Jon C. Ison; Kristoffer Rapacki; Hervé Ménager; Matús Kalas; Emil Rydza; Piotr Chmura; Christian Anthon; Niall Beard; Karel Berka; Dan M. Bolser; Tim Booth; Anthony Bretaudeau; et al. (Nucleic Acids Res., 2016)

The Bologna Annotation Resource (BAR 3.0): improving protein functional annotation. - Giuseppe Profiti; Pier Luigi Martelli; Rita Casadio (Nucleic Acids Res., 2017)

BUSCA: an integrative web server to predict subcellular localization of proteins. - Castrense Savojardo; Pier Luigi Martelli; Piero Fariselli; Giuseppe Profiti; Rita Casadio (Nucleic Acids Res., 2018)

Fido-SNP: the first webserver for scoring the impact of single nucleotide variants in the dog genome. - Emidio Capriotti; Ludovica Montanucci; Giuseppe Profiti; Ivan Rossi; Diana Giannuzzi; Luca Aresu; Piero Fariselli (Nucleic Acids Res., 2019)

Protein Functional Annotation. - Pier Luigi Martelli; Giuseppe Profiti; Rita Casadio (Encyclopedia of Bioinformatics and Computational Biology (2), 2019)

Transmembrane Domain Prediction. - Pier Luigi Martelli; Castrense Savojardo; Giuseppe Profiti; Rita Casadio (Encyclopedia of Bioinformatics and Computational Biology (2), 2019)