2DIs: A SBML Compliant Web Platform for the Design and Modeling of Immune System Interactions. - Marzio Pennisi; Giulia Russo; Giuseppe Sgroi; Giuseppe Parasiliti; Francesco Pappalardo 001 (ICIC (2), 2017)

An agent based modeling approach for the analysis of tuberculosis - immune system dynamics. - Francesco Pappalardo 001; Giulia Russo; Marzio Pennisi; Giuseppe Sgroi; Giuseppe Alessandro Parasiliti Palumbo; Santo Motta; Epifanio Fichera (BIBM, 2018)

Agent based modeling of relapsing multiple sclerosis: a possible approach to predict treatment outcome. - Francesco Pappalardo 001; Giulia Russo; Marzio Pennisi; Giuseppe Sgroi; Giuseppe Alessandro Parasiliti Palumbo; Santo Motta; Davide Maimone; Ferdinando Chiacchio (BIBM, 2018)

A MapReduce tool for in-depth analysis of KEGG pathways: identification and visualization of therapeutic target candidates. - Giuseppe Alessandro Parasiliti Palumbo; Pietro Biondi; Giuseppe Sgroi; Marzio Pennisi; Giulia Russo; Francesco Pappalardo 001 (BIBM, 2019)

In Silico Evaluation of Daclizumab and Vitamin D Effects in Multiple Sclerosis Using Agent Based Models. - Marzio Pennisi; Giulia Russo; Giuseppe Sgroi; Giuseppe Alessandro Parasiliti Palumbo; Francesco Pappalardo 001 (CIBB, 2019)

A MapReduce Based Tool for the Analysis and Discovery of Novel Therapeutic Targets. - Giuseppe Parasiliti; Marzio Pennisi; Pietro Biondi; Giuseppe Sgroi; Giulia Russo; Christian Napoli 001; Francesco Pappalardo 001 (PDP, 2019)

EpiMethEx: a tool for large-scale integrated analysis in methylation hotspots linked to genetic regulation. - Saverio Candido; Giuseppe Alessandro Parasiliti Palumbo; Marzio Pennisi; Giulia Russo; Giuseppe Sgroi; Valentina Di Salvatore; Massimo Libra; Francesco Pappalardo 001 (BMC Bioinform., 2019)

Predicting the artificial immunity induced by RUTI® vaccine against tuberculosis using universal immune system simulator (UISS). - Marzio Pennisi; Giulia Russo; Giuseppe Sgroi; Angela Bonaccorso; Giuseppe Alessandro Parasiliti Palumbo; Epifanio Fichera; Dipendra Kumar Mitra; Kenneth B. Walker; Pere-Joan Cardona; Merce Amat; Marco Viceconti; Francesco Pappalardo 001 (BMC Bioinform., 2019)

Verify: a toolbox for deterministic verification of computational models. - Giuseppe Alessandro Parasiliti Palumbo; Giulia Russo; Giuseppe Sgroi; Marco Viceconti; Marzio Pennisi; Cristina Curreli; Francesco Pappalardo 001 (BIBM, 2020)

Evaluation of the predictive capability of PETAL tool: a retrospective study on potential tyrosine kinases drug resistance targets. - Giuseppe Sgroi; Marzio Pennisi; Giulia Russo; Francesco Pappalardo 001; Giuseppe Alessandro Parasiliti Palumbo (BIBM, 2020)

Moving forward through the in silico modeling of tuberculosis: a further step with UISS-TB. - Giulia Russo; Giuseppe Sgroi; Giuseppe Alessandro Parasiliti Palumbo; Marzio Pennisi; Miguel A. Juárez; Pere-Joan Cardona; Santo Motta; Kenneth B. Walker; Epifanio Fichera; Marco Viceconti; Francesco Pappalardo 001 (BMC Bioinform., 2020)

A multi-step and multi-scale bioinformatic approach to investigate potential source of cross-reactive immunity against SARS-CoV-2 UK variant. - Valentina Di Salvatore; Avisa Maleki; Giulia Russo; Giuseppe Sgroi; Giuseppe Alessandro Parasiliti Palumbo; Francesco Pappalardo 001 (BIBM, 2021)

PEAK: A Clever Python Tool for Exploratory, Regression, and Classification Data. A Case Study for COVID-19. - Giuseppe Sgroi; Giuseppe Alessandro Parasiliti Palumbo; Valentina Di Salvatore; Giulia Russo; Francesco Pappalardo 001 (BIOMESIP, 2021)

PETAL: a Python tool for deep analysis of biological pathways. - Giuseppe Sgroi; Giulia Russo; Francesco Pappalardo 001 (Bioinform., 2021)

Evaluation of word embedding models to extract and predict surgical data in breast cancer. - Giuseppe Sgroi; Giulia Russo; Anna Maglia; Giuseppe Catanuto; Peter Barry; Andreas Karakatsanis; Nicola Rocco; Francesco Pappalardo 001 (BMC Bioinform., 2021)

A multi-step and multi-scale bioinformatic protocol to investigate potential SARS-CoV-2 vaccine targets. - Giulia Russo; Valentina Di Salvatore; Giuseppe Sgroi; Giuseppe Alessandro Parasiliti Palumbo; Pedro A. Reche; Francesco Pappalardo 001 (Briefings Bioinform., 2022)