Fast Parallel Maximum Likelihood-Based Protein Phylogeny. - Christian Blouin; Davin Butt; Glenn Hickey; Andrew Rau-Chaplin (PDCS, 2005)

NAPX: A Polynomial Time Approximation Scheme for the Noah's Ark Problem. - Glenn Hickey; Paz Carmi; Anil Maheshwari; Norbert Zeh (WABI, 2008)

Parallel catastrophe modelling on a cell processor. - Frank K. H. A. Dehne; Glenn Hickey; Andrew Rau-Chaplin; Mark Byrne (CASCON, 2009)

A Practical Algorithm for Estimation of the Maximum Likelihood Ancestral Reconstruction Error. - Glenn Hickey; Mathieu Blanchette (Pacific Symposium on Biocomputing, 2010)

Parallel catastrophe modelling on a Cell/BE. - Frank K. H. A. Dehne; Glenn Hickey; Andrew Rau-Chaplin; Mark Byrne (Int. J. Parallel Emergent Distributed Syst., 2010)

A Probabilistic Model for Sequence Alignment with Context-Sensitive Indels. - Glenn Hickey; Mathieu Blanchette (J. Comput. Biol., 2011)

An Approximation Algorithm for the Noah's Ark Problem with Random Feature Loss. - Glenn Hickey; Mathieu Blanchette; Paz Carmi; Anil Maheshwari; Norbert Zeh (IEEE ACM Trans. Comput. Biol. Bioinform., 2011)

HAL: a hierarchical format for storing and analyzing multiple genome alignments. - Glenn Hickey; Benedict Paten; Dent Earl; Daniel R. Zerbino; David Haussler (Bioinform., 2013)

Building a Pangenome Reference for a Population. - Ngan Nguyen; Glenn Hickey; Daniel R. Zerbino; Brian J. Raney; Dent Earl; Joel Armstrong; David Haussler; Benedict Paten (RECOMB, 2014)

Comparative assembly hubs: Web-accessible browsers for comparative genomics. - Ngan Nguyen; Glenn Hickey; Brian J. Raney; Joel Armstrong; Hiram Clawson; Ann S. Zweig; Donna Karolchik; William James Kent; David Haussler; Benedict Paten (Bioinform., 2014)

A unifying model of genome evolution under parsimony. - Benedict Paten; Daniel R. Zerbino; Glenn Hickey; David Haussler (BMC Bioinform., 2014)

Building a Pan-Genome Reference for a Population. - Ngan Nguyen; Glenn Hickey; Daniel R. Zerbino; Brian J. Raney; Dent Earl; Joel Armstrong; W. James Kent; David Haussler; Benedict Paten (J. Comput. Biol., 2015)

The UCSC Genome Browser database: 2015 update. - Kate R. Rosenbloom; Joel Armstrong; Galt P. Barber; Jonathan Casper; Hiram Clawson; Mark Diekhans; Timothy R. Dreszer; Pauline A. Fujita; Luvina Guruvadoo; Maximilian Haeussler; Rachel A. Harte; Steven G. Heitner; et al. (Nucleic Acids Res., 2015)

Representing and decomposing genomic structural variants as balanced integer flows on sequence graphs. - Daniel R. Zerbino; Tracy Ballinger; Benedict Paten; Glenn Hickey; David Haussler (BMC Bioinform., 2016)

Superbubbles, Ultrabubbles and Cacti. - Benedict Paten; Adam M. Novak; Erik Garrison; Glenn Hickey (RECOMB, 2017)

Superbubbles, Ultrabubbles, and Cacti. - Benedict Paten; Jordan M. Eizenga; Yohei M. Rosen; Adam M. Novak; Erik Garrison; Glenn Hickey (J. Comput. Biol., 2018)

Sequence tube maps: making graph genomes intuitive to commuters. - Wolfgang Beyer; Adam M. Novak; Glenn Hickey; Jeffrey Chan; Vanessa Tan; Benedict Paten; Daniel R. Zerbino (Bioinform., 2019)

Efficient dynamic variation graphs. - Jordan M. Eizenga; Adam M. Novak; Emily Kobayashi; Flavia Villani; Cecilia Cisar; Simon Heumos; Glenn Hickey; Vincenza Colonna; Benedict Paten; Erik Garrison (Bioinform., 2021)