SLPred: a multi-view subcellular localization prediction tool for multi-location human proteins. - Gökhan Özsari; Ahmet Süreyya Rifaioglu; Ahmet Atakan; Tunca Dogan; Maria Jesus Martin; Rengül Çetin-Atalay; Volkan Atalay (Bioinform., 2022)

ProFAB - open protein functional annotation benchmark. - A Samet Özdilek; Ahmet Atakan; Gökhan Özsari; Aybar C. Acar; M. Volkan Atalay; Tunca Dogan; Ahmet Süreyya Rifaioglu (Briefings Bioinform., 2023)