Computational and Machine Learning Methods for Understanding Gene Regulation and Variant Effects - Gonzalo Benegas (2023)

Genomic Language Models: Opportunities and Challenges. - Gonzalo Benegas; Chengzhong Ye; Carlos Albors; Jianan Canal Li; Yun S. Song (CoRR, 2024)

A Phylogenetic Approach to Genomic Language Modeling. - Carlos Albors; Jianan Canal Li; Gonzalo Benegas; Chengzhong Ye; Yun S. Song (RECOMB, 2025)