CARGO: a web portal to integrate customized biological information. - Ildefonso Cases; David G. Pisano; Eduardo Andrés León; Angel Carro; José María Fernández 001; Gonzalo Gómez-López; José Manuel Rodriguez; Jaime F. Vera; Alfonso Valencia; Ana María Rojas (Nucleic Acids Res., 2007)

Beds and Bits: The Challenge of Translational Bioinformatics. - Daniel Glez-Peña; Pablo Vicente Carrera; Gonzalo Gómez-López; Carmen M. Redondo Marey (IWPACBB, 2008)

Current Efforts to Integrate Biological Pathway Information. - Daniel Glez-Peña; Rubén Domínguez; Gonzalo Gómez-López; David G. Pisano; Florentino Fdez-Riverola (IWANN (2), 2009)

WhichGenes: a web-based tool for gathering, building, storing and exporting gene sets with application in gene set enrichment analysis. - Daniel Glez-Peña; Gonzalo Gómez-López; David G. Pisano; Florentino Fdez-Riverola (Nucleic Acids Res., 2009)

PathAgent: Multi-agent System for Updated Pathway Information Integration. - Miguel Reboiro-Jato; Daniel Glez-Peña; Rubén Domínguez; Gonzalo Gómez-López; David G. Pisano; Celso Campos; Florentino Fdez-Riverola (PAAMS (Special Sessions and Workshops), 2010)

PathJam: a new service for integrating biological pathway information. - Daniel Glez-Peña; Miguel Reboiro-Jato; Rubén Domínguez; Gonzalo Gómez-López; David G. Pisano; Florentino Fdez-Riverola (J. Integr. Bioinform., 2010)

An Intuitive Workflow to Retrieve Somatic Mutations in Next Generation Sequencing Studies. - Daniel Glez-Peña; Miguel Reboiro-Jato; Florentino Fdez-Riverola; David G. Pisano; Gonzalo Gómez-López (PACBB, 2011)

PileLine: a toolbox to handle genome position information in next-generation sequencing studies. - Daniel Glez-Peña; Gonzalo Gómez-López; Miguel Reboiro-Jato; Florentino Fdez-Riverola; David G. Pisano (BMC Bioinform., 2011)

PileLineGUI: a desktop environment for handling genome position files in next-generation sequencing studies. - Hugo López-Fernández; Daniel Glez-Peña; Miguel Reboiro-Jato; Gonzalo Gómez-López; David G. Pisano; Florentino Fdez-Riverola (Nucleic Acids Res., 2011)

Applying AIBench Framework to Develop Rich User Interfaces in NGS Studies. - Hugo López-Fernández; Daniel Glez-Peña; Miguel Reboiro-Jato; Gonzalo Gómez-López; David G. Pisano; Florentino Fdez-Riverola (PACBB, 2012)

RUbioSeq: a suite of parallelized pipelines to automate exome variation and bisulfite-seq analyses. - Miriam Rubio-Camarillo; Gonzalo Gómez-López; José María Fernández 001; Alfonso Valencia; David G. Pisano (Bioinform., 2013)

miRGate: a curated database of human, mouse and rat miRNA-mRNA targets. - Eduardo Andrés León; Daniel González-Peña; Gonzalo Gómez-López; David G. Pisano (Database J. Biol. Databases Curation, 2015)

RUbioSeq+: An Application that Executes Parallelized Pipelines to Analyse Next-Generation Sequencing Data. - Miriam Rubio-Camarillo; Hugo López-Fernández; Gonzalo Gómez-López; Angel Carro; José María Fernández 001; Florentino Fdez-Riverola; Daniel Glez-Peña; David G. Pisano (PACBB, 2016)

RUbioSeq+: A multiplatform application that executes parallelized pipelines to analyse next-generation sequencing data. - Miriam Rubio-Camarillo; Hugo López-Fernández; Gonzalo Gómez-López; Angel Carro; José María Fernández 001; Coral Fustero Torre; Florentino Fdez-Riverola; Daniel Glez-Peña (Comput. Methods Programs Biomed., 2017)

Precision medicine needs pioneering clinical bioinformaticians. - Gonzalo Gómez-López; Joaquín Dopazo; Juan C. Cigudosa; Alfonso Valencia; Fátima Al-Shahrour (Briefings Bioinform., 2019)

vulcanSpot: a tool to prioritize therapeutic vulnerabilities in cancer. - Javier Perales-Patón; Tomás Di Domenico; Coral Fustero Torre; Elena Piñeiro-Yáñez; Carlos Carretero-Puche; Héctor Tejero; Alfonso Valencia; Gonzalo Gómez-López; Fátima Al-Shahrour (Bioinform., 2019)

DREIMT: a drug repositioning database and prioritization tool for immunomodulation. - Kevin Troulé; Hugo López-Fernández; Santiago García-Martín; Miguel Reboiro-Jato; Carlos Carretero-Puche; Jordi Martorell-Marugan; Guillermo Martín-Serrano; Pedro Carmona-Saez; Daniel Glez-Peña; Fátima Al-Shahrour; Gonzalo Gómez-López (Bioinform., 2021)

A comprehensive database for integrated analysis of omics data in autoimmune diseases. - Jordi Martorell-Marugan; Raúl López-Domínguez; Adrián García-Moreno; Daniel Toro-Domínguez; Juan Antonio Villatoro-García; Guillermo Barturen; Adoración Martín-Gómez; Kevin Troulé; Gonzalo Gómez-López; Fátima Al-Shahrour; Víctor González-Rumayor; María Peña-Chilet; et al. (BMC Bioinform., 2021)

bollito: a flexible pipeline for comprehensive single-cell RNA-seq analyses. - Luis García-Jimeno; Coral Fustero Torre; María José Jiménez-Santos; Gonzalo Gómez-López; Tomás Di Domenico; Fátima Al-Shahrour (Bioinform., 2022)

PanDrugs2: prioritizing cancer therapies using integrated individual multi-omics data. - María José Jiménez-Santos; Alba Nogueira-Rodríguez; Elena Piñeiro-Yáñez; Hugo López-Fernández; Santiago García-Martín; Paula Gómez-Plana; Miguel Reboiro-Jato; Gonzalo Gómez-López; Daniel Glez-Peña; Fátima Al-Shahrour (Nucleic Acids Res., 2023)