FireDB - a database of functionally important residues from proteins of known structure. - Gonzalo López; Alfonso Valencia; Michael L. Tress (Nucleic Acids Res., 2007)

firestar - prediction of functionally important residues using structural templates and alignment reliability. - Gonzalo López; Alfonso Valencia; Michael L. Tress (Nucleic Acids Res., 2007)

Determination and validation of principal gene products. - Michael L. Tress; Jan-Jaap Wesselink; Adam Frankish; Gonzalo López; Nick Goldman; Ari Löytynoja; Tim Massingham; Fabio Pardi; Simon Whelan; Jennifer L. Harrow; Alfonso Valencia (Bioinform., 2008)

firestar - advances in the prediction of functionally important residues. - Gonzalo López; Paolo Maietta; José Manuel Rodriguez; Alfonso Valencia; Michael L. Tress (Nucleic Acids Res., 2011)

IdentityRank: Named entity disambiguation in the news domain. - Norberto Fernández García; Jesús Arias-Fisteus; Luis Sánchez 001; Gonzalo López (Expert Syst. Appl., 2012)

APPRIS: annotation of principal and alternative splice isoforms. - José Manuel Rodriguez; Paolo Maietta; Iakes Ezkurdia; Alessandro Pietrelli; Jan-Jaap Wesselink; Gonzalo López; Alfonso Valencia; Michael L. Tress (Nucleic Acids Res., 2013)

FireDB: a compendium of biological and pharmacologically relevant ligands. - Paolo Maietta; Gonzalo López; Angel Carro; Benjamin J. Pingilley; Leticia G. Leon; Alfonso Valencia; Michael L. Tress (Nucleic Acids Res., 2014)

ARACNe-AP: gene network reverse engineering through adaptive partitioning inference of mutual information. - Alexander Lachmann; Federico M. Giorgi; Gonzalo López; Andrea Califano (Bioinform., 2016)

svpluscnv: analysis and visualization of complex structural variation data. - Gonzalo López; Laura E. Egolf; Federico M. Giorgi; Sharon J. Diskin; Adam A. Margolin (Bioinform., 2021)