TEcandidates: prediction of genomic origin of expressed transposable elements using RNA-seq data. - Braulio Valdebenito-Maturana; Gonzalo Riadi (Bioinform., 2018)

Hidden Markov Modeling with HMMTeacher. - Camilo Fuentes-Beals; Alejandro Valdés-Jiménez; Gonzalo Riadi (PLoS Comput. Biol., 2022)