Non-parametric quantification of protein lysate arrays. - Jianhua Hu; Xuming He 002; Keith A. Baggerly; Kevin R. Coombes; Bryan T. J. Hennessy; Gordon B. Mills (Bioinform., 2007)

Bayesian models based on test statistics for multiple hypothesis testing problems. - Yuan Ji; Yiling Lu; Gordon B. Mills (Bioinform., 2008)

RPPAML/RIMS: A metadata format and an information management system for reverse phase protein arrays. - Romesh Stanislaus; Mark Carey; Helena F. Deus; Kevin R. Coombes; Bryan T. J. Hennessy; Gordon B. Mills; Jonas S. Almeida (BMC Bioinform., 2008)

Serial dilution curve: a new method for analysis of reverse phase protein array data. - Li Zhang; Qingyi Wei; Li Mao; Wenbin Liu; Gordon B. Mills; Kevin R. Coombes (Bioinform., 2009)

Exposing the cancer genome atlas as a SPARQL endpoint. - Helena F. Deus; Diogo F. Veiga; Pablo R. Freire; John N. Weinstein; Gordon B. Mills; Jonas S. Almeida (J. Biomed. Informatics, 2010)

Sparse Bayesian graphical models for RPPA time course data. - Riten Mitra; Peter Müller 003; Yuan Ji; Gordon B. Mills; Yiling Lu (GENSiPS, 2012)

Bayesian Inference of Signaling Network Topology in a Cancer Cell Line. - Steven M. Hill; Yiling Lu; Jennifer Molina; Laura Heiser; Paul T. Spellman; Terence P. Speed; Joe W. Gray; Gordon B. Mills; Sach Mukherjee (Bioinform., 2012)

Network inference using steady-state data and Goldbeter-Koshland kinetics. - Chris J. Oates; Bryan T. J. Hennessy; Yiling Lu; Gordon B. Mills; Sach Mukherjee (Bioinform., 2013)

Perturbation Biology: Inferring Signaling Networks in Cellular Systems. - Evan J. Molinelli; Anil Korkut; Weiqing Wang; Martin L. Miller; Nicholas Paul Gauthier; Xiaohong Jing; Poorvi Kaushik; Qin He; Gordon B. Mills; David B. Solit; Christine A. Pratilas; Martin Weigt; et al. (PLoS Comput. Biol., 2013)

Bias from removing read duplication in ultra-deep sequencing experiments. - Wanding Zhou; Tenghui Chen; Hao Zhao; Agda Karina Eterovic; Funda Meric-Bernstam; Gordon B. Mills; Ken Chen 001 (Bioinform., 2014)

Development of a robust classifier for quality control of reverse-phase protein arrays. - Zhenlin Ju; Wenbin Liu; Paul L. Roebuck; Doris R. Siwak; Nianxiang Zhang; Yiling Lu; Michael A. Davies; Rehan Akbani; John N. Weinstein; Gordon B. Mills; Kevin R. Coombes (Bioinform., 2015)

Molecular heterogeneity at the network level: high-dimensional testing, clustering and a TCGA case study. - Nicolas Städler; Frank Dondelinger; Steven M. Hill; Rehan Akbani; Yiling Lu; Gordon B. Mills; Sach Mukherjee (Bioinform., 2017)

mi-IsoNet: systems-scale microRNA landscape reveals rampant isoform-mediated gain of target interaction diversity and signaling specificity. - Li Guo; Yongsheng Li; Kara M. Cirillo; Robert A. Marick; Zhe Su; Xing Yin; Xu Hua; Gordon B. Mills; Nidhi Sahni; S. Stephen Yi (Briefings Bioinform., 2021)

RPPA SPACE: an R package for normalization and quantitation of Reverse-Phase Protein Array data. - Huma Shehwana; Shwetha V. Kumar; James M. Melott; Mary A. Rohrdanz; Chris Wakefield; Zhenlin Ju; Doris R. Siwak; Yiling Lu; Bradley M. Broom; John N. Weinstein; Gordon B. Mills; Rehan Akbani (Bioinform., 2022)

Supervised learning of high-confidence phenotypic subpopulations from single-cell data. - Tao Ren; Canping Chen; Alexey V. Danilov; Susan Liu; Xiangnan Guan; Shunyi Du; Xiwei Wu; Mara H. Sherman; Paul T. Spellman; Lisa M. Coussens; Andrew C. Adey; Gordon B. Mills; et al. (Nat. Mac. Intell., 2023)

Author Correction: Supervised learning of high-confidence phenotypic subpopulations from single-cell data. - Tao Ren; Canping Chen; Alexey V. Danilov; Susan Liu; Xiangnan Guan; Shunyi Du; Xiwei Wu; Mara H. Sherman; Paul T. Spellman; Lisa M. Coussens; Andrew C. Adey; Gordon B. Mills; et al. (Nat. Mac. Intell., 2023)

TCGA Kidney Cancers. - John N. Weinstein; Eric A. Collisson; Gordon B. Mills; Kenna R. Mills Shaw; Brad A. Ozenberger; Kyle Ellrott; Ilya Shmulevich; Chris Sander; Joshua M. Stuart (UCI Machine Learning Repository, 2023)

Data Valuation with Gradient Similarity. - Nathaniel J. Evans; Gordon B. Mills; Guanming Wu; Xubo Song; Shannon K. McWeeney (CoRR, 2024)