Adaptive Smooth Activation for Improved Disease Diagnosis and Organ Segmentation from Radiology Scans. - Koushik Biswas; Debesh Jha; Nikhil Kumar Tomar; Gorkem Durak; Alpay Medetalibeyoglu; Matthew Antalek; Yury Velichko; Daniela P. Ladner; Amir Borhani; Ulas Bagci (CoRR, 2023)

Detection of Peri-Pancreatic Edema using Deep Learning and Radiomics Techniques. - Ziliang Hong; Debesh Jha; Koushik Biswas; Zheyuan Zhang; Yury Velichko; Cemal Yazici; Temel Tirkes; Amir Borhani; Baris Turkbey; Alpay Medetalibeyoglu; Gorkem Durak; Ulas Bagci (EMBC, 2024)

CT Liver Segmentation Via PVT-Based Encoding and Refined Decoding. - Debesh Jha; Nikhil Kumar Tomar; Koushik Biswas; Gorkem Durak; Alpay Medetalibeyoglu; Matthew Antalek; Yury Velichko; Daniela P. Ladner; Amir Borhani; Ulas Bagci (ISBI, 2024)

Adaptive Smooth Activation Function for Improved Organ Segmentation and Disease Diagnosis. - Koushik Biswas; Debesh Jha; Nikhil Kumar Tomar; Meghana Karri; Amit Reza; Gorkem Durak; Alpay Medetalibeyoglu; Matthew Antalek; Yury Velichko; Daniela P. Ladner; Amir Borhani; Ulas Bagci (MICCAI (9), 2024)

Practical and Ethical Considerations for Generative AI in Medical Imaging. - Debesh Jha; Ashish Rauniyar; Desta Haileselassie Hagos; Vanshali Sharma; Nikhil Kumar Tomar; Zheyuan Zhang; Ilkin Isler; Gorkem Durak; Michael B. Wallace; Cemal Yazici; Tyler M. Berzin; Koushik Biswas; et al. (FAIMI/EPIMI@MICCAI, 2024)

Optimizing Synthetic Data for Enhanced Pancreatic Tumor Segmentation. - Linkai Peng; Zheyuan Zhang; Gorkem Durak; Frank H. Miller; Alpay Medetalibeyoglu; Michael B. Wallace; Ulas Bagci (AIPAD/PILM@MICCAI, 2024)

A Novel Momentum-Based Deep Learning Techniques for Medical Image Classification and Segmentation. - Koushik Biswas; Ridam Pal; Shaswat Patel; Debesh Jha; Meghana Karri; Amit Reza; Gorkem Durak; Alpay Medetalibeyoglu; Matthew Antalek; Yury Velichko; Daniela P. Ladner; Amir Borhani; et al. (MLMI@MICCAI (1), 2024)

MDNet: Multi-Decoder Network for Abdominal CT Organs Segmentation. - Debesh Jha; Nikhil Kumar Tomar; Koushik Biswas; Gorkem Durak; Matthew Antalek; Zheyuan Zhang; Bin Wang 068; Md Mostafijur Rahman; Hongyi Pan; Alpay Medetalibeyoglu; Yury Velichko; Daniela P. Ladner; et al. (CoRR, 2024)

Towards Synergistic Deep Learning Models for Volumetric Cirrhotic Liver Segmentation in MRIs. - Vandan Gorade; Onkar Susladkar; Gorkem Durak; Elif Keles; Ertugrul Aktas; Timurhan Cebeci; Alpay Medetalibeyoglu; Daniela P. Ladner; Debesh Jha; Ulas Bagci (CoRR, 2024)

A Novel Momentum-Based Deep Learning Techniques for Medical Image Classification and Segmentation. - Koushik Biswas; Ridal Pal; Shaswat Patel; Debesh Jha; Meghana Karri; Amit Reza; Gorkem Durak; Alpay Medetalibeyoglu; Matthew Antalek; Yury Velichko; Daniela P. Ladner; Amir Borhani; et al. (CoRR, 2024)

PolypDB: A Curated Multi-Center Dataset for Development of AI Algorithms in Colonoscopy. - Debesh Jha; Nikhil Kumar Tomar; Vanshali Sharma; Quoc-Huy Trinh; Koushik Biswas; Hongyi Pan; Ritika Kumari Jha; Gorkem Durak; Alexander Hann; Jonas Varkey; Hang Viet Dao; Long Van Dao; et al. (CoRR, 2024)

CirrMRI600+: Large Scale MRI Collection and Segmentation of Cirrhotic Liver. - Debesh Jha; Onkar Susladkar; Vandan Gorade; Elif Keles; Matthew Antalek; Deniz Seyithanoglu; Timurhan Cebeci; Ertugrul Aktas; Gulbiz Dagoglu Kartal; Sabahattin Kaymakoglu; Sukru Mehmet Erturk; Yuri S. Velichko; et al. (CoRR, 2024)

Adaptive Aggregation Weights for Federated Segmentation of Pancreas MRI. - Hongyi Pan; Gorkem Durak; Zheyuan Zhang; Yavuz Taktak; Elif Keles; Ertugrul Aktas; Alpay Medetalibeyoglu; Yury Velichko; Concetto Spampinato; Ivo Schoots; Marco J. Bruno; Rajesh N. Keswani; et al. (CoRR, 2024)

Mortality Prediction of Pulmonary Embolism Patients with Deep Learning and XGBoost. - Yalcin Tur; Vedat Cicek; Tufan Cinar; Elif Keles; Bradlay D. Allen; Hatice Savas; Gorkem Durak; Alpay Medetalibeyoglu; Ulas Bagci (CoRR, 2024)

Eyes Tell the Truth: GazeVal Highlights Shortcomings of Generative AI in Medical Imaging. - David C. Wong 005; Bin Wang 068; Gorkem Durak; Marouane Tliba; Akshay Chaudhari; Aladine Chetouani; Ahmet Enis Çetin; Cagdas Topel; Nicolo Gennaro; Camila Lopes Vendrami; Tugce Agirlar Trabzonlu; Amir Ali Rahsepar; et al. (CVPR Workshops, 2025)

Shifts in Doctors' Eye Movements Between Real and AI-Generated Medical Images. - David C. Wong 005; Bin Wang 068; Gorkem Durak; Marouane Tliba; Mohamed Amine Kerkouri; Aladine Chetouani; Ahmet Enis Çetin; Cagdas Topel; Nicolo Gennaro; Camila Vendrami; Tugce Agirlar Trabzonlu; Amir Ali Rahsepar; et al. (ETRA, 2025)

MDNet: Multi-Decoder Network for Abdominal CT Organs Segmentation. - Debesh Jha; Nikhil Kumar Tomar; Koushik Biswas; Gorkem Durak; Matthew Antalek; Zheyuan Zhang; Bin Wang 068; Md Mostafijur Rahman; Hongyi Pan; Alpay Medetalibeyoglu; Vandan Gorade; Abhijit Das; et al. (ICASSP, 2025)

A New Logic for Pediatric Brain Tumor Segmentation. - Max Bengtsson; Elif Keles; Gorkem Durak; Syed Anwar; Yuri S. Velichko; Marius George Linguraru; Angela J. Waanders; Ulas Bagci (ISBI, 2025)

Adaptive Aggregation Weights for Federated Segmentation of Pancreas MRI. - Hongyi Pan; Gorkem Durak; Zheyuan Zhang; Yavuz Taktak; Elif Keles; Halil Ertugrul Aktas; Alpay Medetalibeyoglu; Yury Velichko; Concetto Spampinato; Ivo Schoots; Marco J. Bruno; Rajesh N. Keswani; et al. (ISBI, 2025)

IPMN Risk Assessment Under Federated Learning Paradigm. - Hongyi Pan; Ziliang Hong; Gorkem Durak; Elif Keles; Halil Ertugrul Aktas; Yavuz Taktak; Alpay Medetalibeyoglu; Zheyuan Zhang; Yury Velichko; Concetto Spampinato; Ivo Schoots; Marco J. Bruno; et al. (ISBI, 2025)

Is Long Range Sequential Modeling Necessary for Colorectal Tumor Segmentation? - Abhishek Srivastava; Koushik Biswas; Gorkem Durak; Gulsah Ozden; Mustafa Adli; Ulas Bagci (ISBI, 2025)

Uncertainty-Guided Cross Attention Ensemble Mean Teacher for Semi-Supervised Medical Image Segmentation. - Meghana Karri; Amit Soni Arya; Koushik Biswas; Nicolo Gennaro; Vedat Cicek; Gorkem Durak; Yuri S. Velichko; Ulas Bagci (WACV, 2025)

Large-scale multi-center CT and MRI segmentation of pancreas with deep learning. - Zheyuan Zhang; Elif Keles; Gorkem Durak; Yavuz Taktak; Onkar Susladkar; Vandan Gorade; Debesh Jha; Asli C. Ormeci; Alpay Medetalibeyoglu; Lanhong Yao; Bin Wang 068; Ilkin Sevgi Isler; et al. (Medical Image Anal., 2025)

Liver Cirrhosis Stage Estimation from MRI with Deep Learning. - Jun Zeng 007; Debesh Jha; Ertugrul Aktas; Elif Keles; Alpay Medetalibeyoglu; Matthew Antalek; Amir Borhani; Daniela P. Ladner; Gorkem Durak; Ulas Bagci (CoRR, 2025)

Predicting Risk of Pulmonary Fibrosis Formation in PASC Patients. - Wanying Dou; Gorkem Durak; Koushik Biswas; Ziliang Hong; Andrea Mia Bejar; Elif Keles; Kaan Akin; Sukru Mehmet Erturk; Alpay Medetalibeyoglu; Marc Sala; Alexander Misharin; Hatice Savas; et al. (CoRR, 2025)

TAGS: 3D Tumor-Adaptive Guidance for SAM. - Sirui Li; Linkai Peng; Zheyuan Zhang; Gorkem Durak; Ulas Bagci (CoRR, 2025)

Pediatric Pancreas Segmentation from MRI Scans with Deep Learning. - Elif Keles; Merve Yazol; Gorkem Durak; Ziliang Hong; Halil Ertugrul Aktas; Zheyuan Zhang; Linkai Peng; Onkar Susladkar; Necati Guzelyel; Oznur Leman Boyunaga; Cemal Yazici; Mark Lowe; et al. (CoRR, 2025)

Federated Breast Cancer Detection Enhanced by Synthetic Ultrasound Image Augmentation. - Hongyi Pan; Ziliang Hong; Gorkem Durak; Ziyue Xu 001; Ulas Bagci (CoRR, 2025)

Cyst-X: AI-Powered Pancreatic Cancer Risk Prediction from Multicenter MRI in Centralized and Federated Learning. - Hongyi Pan; Gorkem Durak; Elif Keles; Deniz Seyithanoglu; Zheyuan Zhang; Alpay Medetalibeyoglu; Halil Ertugrul Aktas; Andrea Mia Bejar; Ziliang Hong; Yavuz Taktak; Gulbiz Dagoglu Kartal; Sukru Mehmet Erturk; et al. (CoRR, 2025)

Rethink Domain Generalization in Heterogeneous Sequence MRI Segmentation. - Zheyuan Zhang; Linkai Peng; Wanying Dou; Cuiling Sun; Halil Ertugrul Aktas; Andrea Mia Bejar; Elif Keles; Gorkem Durak; Ulas Bagci (CoRR, 2025)