DBTBS: a database of Bacillus subtilis promoters and transcription factors. - Takahiro Ishii; Ken-ichi Yoshida 002; Goro Terai; Yasutaro Fujita; Kenta Nakai (Nucleic Acids Res., 2001)

Predicting rules on organization of cis-regulatory elements, taking the order of elements into account. - Goro Terai; Toshihisa Takagi (Bioinform., 2004)

fRNAdb: a platform for mining/annotating functional RNA candidates from non-coding RNA sequences. - Taishin Kin; Kouichirou Yamada; Goro Terai; Hiroaki Okida; Yasuhiko Yoshinari; Yukiteru Ono; Aya Kojima; Yuki Kimura; Takashi Komori; Kiyoshi Asai (Nucleic Acids Res., 2007)

Software.ncrna.org: web servers for analyses of RNA sequences. - Kiyoshi Asai; Hisanori Kiryu; Michiaki Hamada; Yasuo Tabei; Kengo Sato; Hiroshi Matsui; Yasubumi Sakakibara; Goro Terai; Toutai Mituyama (Nucleic Acids Res., 2008)

The Functional RNA Database 3.0: databases to support mining and annotation of functional RNAs. - Toutai Mituyama; Kouichirou Yamada; Emi Hattori; Hiroaki Okida; Yukiteru Ono; Goro Terai; Aya Yoshizawa; Takashi Komori; Kiyoshi Asai (Nucleic Acids Res., 2009)

A detailed investigation of accessibilities around target sites of siRNAs and miRNAs. - Hisanori Kiryu; Goro Terai; Osamu Imamura; Hiroyuki Yoneyama; Kenji Suzuki; Kiyoshi Asai (Bioinform., 2011)

Ustiloxins, fungal cyclic peptides, are ribosomally synthesized in Ustilaginoidea virens. - Takahiro Tsukui; Nozomi Nagano; Myco Umemura; Toshitaka Kumagai; Goro Terai; Masayuki Machida; Kiyoshi Asai (Bioinform., 2015)

CDSfold: an algorithm for designing a protein-coding sequence with the most stable secondary structure. - Goro Terai; Satoshi Kamegai; Kiyoshi Asai (Bioinform., 2016)

Comprehensive prediction of lncRNA-RNA interactions in human transcriptome. - Goro Terai; Junichi Iwakiri; Tomoshi Kameda; Michiaki Hamada; Kiyoshi Asai (BMC Genom., 2016)

Evolutionary design of multiple genes encoding the same protein. - Goro Terai; Satoshi Kamegai; Akito Taneda; Kiyoshi Asai (Bioinform., 2017)

Finding the direct optimal RNA barrier energy and improving pathways with an arbitrary energy model. - Hiroki Takizawa; Junichi Iwakiri; Goro Terai; Kiyoshi Asai (Bioinform., 2020)