Quantitative microarray spot profile optimization: A systematic evaluation of buffer/slide combinations. - David P. Kreil; Richard P. Auburn; Lisa A. Meadows; Steven Russell; Gos Micklem (German Conference on Bioinformatics, 2003)

A friendly statistics package for microarray analysis. - Peter Sykacek; R. A. Furlong; Gos Micklem (Bioinform., 2005)

Bayesian modelling of shared gene function. - Peter Sykacek; R. Clarkson; Cristin G. Print; R. A. Furlong; Gos Micklem (Bioinform., 2007)

New tools for self-organized pattern formation. - Kaj Bernhardt; Nikhilesh Chand; Elizabeth Carter; Jisun Lee; Yang Xu; Xueni Zhu; Duncan Rowe; James W. Ajioka; J. M. Gonçalves; Jim Haseloff; Gos Micklem (BMC Syst. Biol., 2007)

The modENCODE Data Coordination Center: lessons in harvesting comprehensive experimental details. - Nicole L. Washington; E. O. Stinson; Marc D. Perry; Peter Ruzanov; Sergio Contrino; Richard N. Smith; Zheng Zha; Rachel Lyne; Adrian Carr; Paul Lloyd; Ellen T. Kephart; Sheldon J. McKay; et al. (Database J. Biol. Databases Curation, 2011)

The impact of quantitative optimization of hybridization conditions on gene expression analysis. - Peter Sykacek; David P. Kreil; Lisa A. Meadows; Richard P. Auburn; Bettina Fischer; Steven Russell; Gos Micklem (BMC Bioinform., 2011)

YeastMine - an integrated data warehouse for Saccharomyces cerevisiae data as a multipurpose tool-kit. - Rama Balakrishnan; Julie Park; Kalpana Karra; Benjamin C. Hitz; Gail Binkley; Eurie L. Hong; Julie M. Sullivan; Gos Micklem; J. Michael Cherry (Database J. Biol. Databases Curation, 2012)

InterMine: a flexible data warehouse system for the integration and analysis of heterogeneous biological data. - Richard N. Smith; Jelena Aleksic; Daniela Butano; Adrian Carr; Sergio Contrino; Fengyuan Hu; Mike Lyne; Rachel Lyne; Alex Kalderimis; Kim Rutherford; Radek Stepan; Julie M. Sullivan; et al. (Bioinform., 2012)

modMine: flexible access to modENCODE data. - Sergio Contrino; Richard N. Smith; Daniela Butano; Adrian Carr; Fengyuan Hu; Rachel Lyne; Kim Rutherford; Alex Kalderimis; Julie M. Sullivan; Seth Carbon; Ellen T. Kephart; Paul Lloyd; et al. (Nucleic Acids Res., 2012)

metabolicMine: an integrated genomics, genetics and proteomics data warehouse for common metabolic disease research. - Mike Lyne; Richard N. Smith; Rachel Lyne; Jelena Aleksic; Fengyuan Hu; Alex Kalderimis; Radek Stepan; Gos Micklem (Database J. Biol. Databases Curation, 2013)

BioJS InterMine List Analysis: A BioJS component for displaying graphical or statistical analysis of collections of items from InterMine endpoints. - Alex Kalderimis; Radek Stepan; Julie M. Sullivan; Rachel Lyne; Michael Lyne; Gos Micklem (F1000Research, 2014)

BioJS InterMineTable Component: A BioJS component for displaying data from InterMine compatible webservice endpoints. - Alex Kalderimis; Radek Stepan; Julie M. Sullivan; Rachel Lyne; Michael Lyne; Gos Micklem (F1000Research, 2014)

BioJS DAGViewer: A reusable JavaScript component for displaying directed graphs. - Alex Kalderimis; Radek Stepan; Julie M. Sullivan; Rachel Lyne; Michael Lyne; Gos Micklem (F1000Research, 2014)

InterMine: extensive web services for modern biology. - Alex Kalderimis; Rachel Lyne; Daniela Butano; Sergio Contrino; Mike Lyne; Joshua Heimbach; Fengyuan Hu; Richard N. Smith; Radek Stepan; Julie M. Sullivan; Gos Micklem (Nucleic Acids Res., 2014)

toxoMine: an integrated omics data warehouse for Toxoplasma gondii systems biology research. - David B. Rhee; Matthew McKnight Croken; Kevin R. Shieh; Julie M. Sullivan; Gos Micklem; Kami Kim; Aaron Golden (Database J. Biol. Databases Curation, 2015)

Araport: the Arabidopsis Information Portal. - Vivek Krishnakumar; Matthew R. Hanlon; Sergio Contrino; Erik S. Ferlanti; Svetlana Karamycheva; Maria Kim; Benjamin D. Rosen; Chia-Yi Cheng; Walter Moreira; Stephen A. Mock; Joseph Stubbs; Julie M. Sullivan; et al. (Nucleic Acids Res., 2015)

Understanding the Systems Biology of Pathogen Virulence Using Semantic Methodologies. - David Rhee; Kevin R. Shieh; Julie M. Sullivan; Gos Micklem; Kami Kim; Aaron Golden (ICSC, 2016)

Semantic Research Platform for Model Organisms. - Maxime Déraspe; Kalpana Karra; Gail Binkley; Julie M. Sullivan; Gos Micklem; Jacques Corbeil; J. Michael Cherry; Michel Dumontier (BMDID@ISWC, 2016)

Making Linked Data SPARQL with the InterMine Biological Data Warehouse. - Maxime Déraspe; Gail Binkley; Daniela Butano; Matthew Chadwick; J. Michael Cherry; Justin Clark-Casey; Sergio Contrino; Jacques Corbeil; Joshua Heimbach; Kalpana Karra; Rachel Lyne; Julie M. Sullivan; et al. (SWAT4LS, 2016)

ComplexViewer: visualization of curated macromolecular complexes. - Colin W. Combe; Marine Sivade; Henning Hermjakob; Joshua Heimbach; Birgit H. M. Meldal; Gos Micklem; Sandra E. Orchard; Juri Rappsilber (Bioinform., 2017)

Empirical Bayes method for reducing false discovery rates of correlation matrices with block diagonal structure. - Clare Pacini; James W. Ajioka; Gos Micklem (BMC Bioinform., 2017)

Encompassing new use cases - level 3.0 of the HUPO-PSI format for molecular interactions. - M. Sivade Dumousseau; Diego Alonso-López; Mais G. Ammari; Glyn Bradley; Nancy H. Campbell; Arnaud Céol; Gianni Cesareni; Colin W. Combe; Javier De Las Rivas; Noemi del-Toro; Joshua Heimbach; Henning Hermjakob; et al. (BMC Bioinform., 2018)

The InterMine Android app: Cross-organism genomic data in your pocket. - Daria Komkova; Rachel Lyne; Julie M. Sullivan; Yo Yehudi; Gos Micklem (F1000Research, 2018)

Implementing FAIR Principles in InterMine. - Daniela Butano; Justin Clark-Casey; Sergio Contrino; Joshua Heimbach; Rachel Lyne; Kevin Herald Reierskog; Julie M. Sullivan; Yo Yehudi; Gos Micklem (SWAT4HCLS, 2019)

InterMineR: an R package for InterMine databases. - Konstantinos A Kyritsis; Bing Wang; Julie M. Sullivan; Rachel Lyne; Gos Micklem (Bioinform., 2019)

BioHackathon series in 2013 and 2014: improvements of semantic interoperability in life science data and services. - Toshiaki Katayama; Shuichi Kawashima; Gos Micklem; Shin Kawano; Jin-Dong Kim; Simon Kocbek; Shinobu Okamoto; Yue Wang 040; Hongyan Wu; Atsuko Yamaguchi; Yasunori Yamamoto; Erick Antezana; et al. (F1000Research, 2019)

Translating synthetic natural language to database queries: a polyglot deep learning framework. - Adrián Bazaga; Nupur Gunwant; Gos Micklem (CoRR, 2021)

Learning from learning machines: a new generation of AI technology to meet the needs of science. - Luca Pion-Tonachini; Kristofer E. Bouchard; Héctor García Martín; Sean Peisert; W. Bradley Holtz; Anil Aswani; Dipankar Dwivedi; Haruko M. Wainwright; Ghanshyam Pilania; Benjamin Nachman; Babetta L. Marrone; Nicola Falco; et al. (CoRR, 2021)

HumanMine: advanced data searching, analysis and cross-species comparison. - Rachel Lyne; Adrián Bazaga; Daniela Butano; Sergio Contrino; Joshua Heimbach; Fengyuan Hu; Alex Kalderimis; Mike Lyne; Kevin Herald Reierskog; Radek Stepan; Julie M. Sullivan; Archie Wise; et al. (Database J. Biol. Databases Curation, 2022)

Unsupervised Fact Verification by Language Model Distillation. - Adrián Bazaga; Pietro Liò; Gos Micklem (CoRR, 2023)

SQLformer: Deep Auto-Regressive Query Graph Generation for Text-to-SQL Translation. - Adrián Bazaga; Pietro Liò; Gos Micklem (CoRR, 2023)

HyperBERT: Mixing Hypergraph-Aware Layers with Language Models for Node Classification on Text-Attributed Hypergraphs. - Adrián Bazaga; Pietro Lio; Gos Micklem (EMNLP (Findings), 2024)

Language Model Knowledge Distillation for Efficient Question Answering in Spanish. - Adrián Bazaga; Pietro Lio; Gos Micklem (Tiny Papers @ ICLR, 2024)

Unsupervised Pretraining for Fact Verification by Language Model Distillation. - Adrián Bazaga; Pietro Lio; Gos Micklem (ICLR, 2024)