OMXWare, A Cloud-Based Platform for Studying Microbial Life at Scale. - Edward E. Seabolt; Gowri Nayar; Harsha Krishnareddy; Akshay Agarwal 002; Kristen L. Beck; Ignacio Terrizzano; Eser Kandogan; Mary Roth; Vandana V. Mukherjee; James H. Kaufman (CoRR, 2019)

Survey of public assay data: opportunities and challenges to understanding antimicrobial resistance. - Akshay Agarwal 002; Gowri Nayar; James H. Kaufman (SAC, 2020)

Functional Genomics Platform, A Cloud-Based Platform for Studying Microbial Life at Scale. - Edward E. Seabolt; Gowri Nayar; Harsha Krishnareddy; Akshay Agarwal 002; Kristen L. Beck; Ignacio Terrizzano; Eser Kandogan; Mark Kunitomi; Mary Roth; Vandana V. Mukherjee; James H. Kaufman (IEEE ACM Trans. Comput. Biol. Bioinform., 2022)

Pool PaRTI protein sequence embeddings and residue importance scores for ESM-2 650M and protBERT. - Alp Tartici; Gowri Nayar; Russ B. Altman (Zenodo, 2025)