Increasing depth resolution of electron microscopy of neural circuits using sparse tomographic reconstruction. - Ashok Veeraraghavan; Alex V. Genkin; Shiv Naga Prasad Vitaladevuni; Lou Scheffer; Shan Xu; Harald F. Hess; Richard Fetter; Marco Cantoni; Graham Knott; Dmitri B. Chklovskii (CVPR, 2010)

Automated segmentation of synapses in 3D EM data. - Anna Kreshuk; Christoph N. Straehle; Christoph Sommer 002; Ullrich Köthe; Graham Knott; Fred A. Hamprecht (ISBI, 2011)

Carving: Scalable Interactive Segmentation of Neural Volume Electron Microscopy Images. - Christoph N. Straehle; Ullrich Köthe; Graham Knott; Fred A. Hamprecht (MICCAI (1), 2011)

Seeded watershed cut uncertainty estimators for guided interactive segmentation. - Christoph N. Straehle; Ullrich Köthe; Graham Knott; Kevin L. Briggman; Winfried Denk; Fred A. Hamprecht (CVPR, 2012)

Globally Optimal Closed-Surface Segmentation for Connectomics. - Björn Andres; Thorben Kröger; Kevin L. Briggman; Winfried Denk; Natalya Korogod; Graham Knott; Ullrich Köthe; Fred A. Hamprecht (ECCV (3), 2012)

Learning Context Cues for Synapse Segmentation in EM Volumes. - Carlos J. Becker; Karim Ali 002; Graham Knott; Pascal Fua (MICCAI (1), 2012)

Efficient Scanning for EM Based Target Localization. - Raphael Sznitman; Aurélien Lucchi; Natasa Pjescic-Emedji; Graham Knott; Pascal Fua (MICCAI (3), 2012)

Supervoxel-Based Segmentation of Mitochondria in EM Image Stacks With Learned Shape Features. - Aurélien Lucchi; Kevin Smith 001; Radhakrishna Achanta; Graham Knott; Pascal Fua (IEEE Trans. Medical Imaging, 2012)

Flash Scanning Electron Microscopy. - Raphael Sznitman; Aurélien Lucchi; Marco Cantoni; Graham Knott; Pascal Fua (MICCAI (3), 2013)

Learning Context Cues for Synapse Segmentation. - Carlos J. Becker; Karim Ali 002; Graham Knott; Pascal Fua (IEEE Trans. Medical Imaging, 2013)

Improving 3D EM data segmentation by joint optimization over boundary evidence and biological priors. - Nikola Krasowski; Thorsten Beier; Graham W. Knott; Ullrich Köthe; Fred A. Hamprecht; Anna Kreshuk (ISBI, 2015)

Modeling Brain Circuitry over a Wide Range of Scales. - Pascal Fua; Graham Knott (CoRR, 2015)

NeuroMorph: A Toolset for the Morphometric Analysis and Visualization of 3D Models Derived from Electron Microscopy Image Stacks. - Anne Jorstad; Biagio Nigro; Corrado Calì; Marta Wawrzyniak; Pascal Fua; Graham Knott (Neuroinformatics, 2015)

Learning Structured Models for Segmentation of 2-D and 3-D Imagery. - Aurélien Lucchi; Pablo Márquez-Neila; Carlos J. Becker; Yunpeng Li 002; Kevin Smith 001; Graham Knott; Pascal Fua (IEEE Trans. Medical Imaging, 2015)

Neuron Segmentation With High-Level Biological Priors. - Nikola Krasowski; Thorsten Beier; Graham Knott; Ullrich Köthe; Fred A. Hamprecht; Anna Kreshuk (IEEE Trans. Medical Imaging, 2018)

Probabilistic Atlases to Enforce Topological Constraints. - Udaranga Wickramasinghe; Graham Knott; Pascal Fua (MICCAI (1), 2019)

VM-Net: Mesh Modeling to Assist Segmentation in Volumetric Data. - Udaranga Wickramasinghe; Graham Knott; Pascal Fua (CoRR, 2019)

Voxel2Mesh: 3D Mesh Model Generation from Volumetric Data. - Udaranga Wickramasinghe; Edoardo Remelli; Graham Knott; Pascal Fua (MICCAI (4), 2020)

Deep Active Surface Models. - Udaranga Wickramasinghe; Pascal Fua; Graham Knott (CVPR, 2021)