Hyperscape: visualization for complex biological networks. - Graham L. Cromar; Anthony Zhao; Alex Yang; John Parkinson (Bioinform., 2015)

PhyloPro2.0: a database for the dynamic exploration of phylogenetically conserved proteins and their domain architectures across the Eukarya. - Graham L. Cromar; Anthony Zhao; Xuejian Xiong; Lakshmipuram S. Swapna; Noeleen Loughran; Hongyan Song; John Parkinson (Database J. Biol. Databases Curation, 2016)

Cell4D: a general purpose spatial stochastic simulator for cellular pathways. - Donny Chan; Graham L. Cromar; Billy Taj; John Parkinson (BMC Bioinform., 2024)