AlphaMPSim: flexible simulation of multi-parent crosses. - John M. Hickey; Gregor Gorjanc; Sarah Hearne; Bevan Emma Huang (Bioinform., 2014)

AlphaMate: a program for optimizing selection, maintenance of diversity and mate allocation in breeding programs. - Gregor Gorjanc; John M. Hickey (Bioinform., 2018)

AlphaFamImpute: high-accuracy imputation in full-sib families from genotype-by-sequencing data. - Andrew Whalen; Gregor Gorjanc; John M. Hickey (Bioinform., 2020)